miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 105258 0.66 0.973711
Target:  5'- aCgGUGUGaCGGCACCCaAAGAcaaACCg -3'
miRNA:   3'- -GgCACACgGUCGUGGGgUUCUuc-UGG- -5'
13995 5' -54.9 NC_003521.1 + 40743 0.67 0.971034
Target:  5'- gCUGUGUGCUGGCGaggCCAAGccGGCg -3'
miRNA:   3'- -GGCACACGGUCGUgg-GGUUCuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 165038 0.67 0.971034
Target:  5'- -gGUGcUGCCGcggcgucuGCACCUgGAGgcGGCCu -3'
miRNA:   3'- ggCAC-ACGGU--------CGUGGGgUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 126124 0.67 0.971034
Target:  5'- cUCGUcGUGCCGGUACacgugcaUgGGGAAGACg -3'
miRNA:   3'- -GGCA-CACGGUCGUGg------GgUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 148892 0.67 0.971034
Target:  5'- gCCGUG-GCCG--ACgCCGAGGAGcGCCg -3'
miRNA:   3'- -GGCACaCGGUcgUGgGGUUCUUC-UGG- -5'
13995 5' -54.9 NC_003521.1 + 215506 0.67 0.971034
Target:  5'- ---cGUGCCGGcCACCU--GGAAGACg -3'
miRNA:   3'- ggcaCACGGUC-GUGGGguUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 119799 0.67 0.971034
Target:  5'- aCGag-GUCGGCGCCgCCGAGGAGGuCUg -3'
miRNA:   3'- gGCacaCGGUCGUGG-GGUUCUUCU-GG- -5'
13995 5' -54.9 NC_003521.1 + 236576 0.67 0.971034
Target:  5'- gCCGUGUGCCaucucacggcAGCcaGCCUCGGGGcuccGACa -3'
miRNA:   3'- -GGCACACGG----------UCG--UGGGGUUCUu---CUGg -5'
13995 5' -54.9 NC_003521.1 + 421 0.67 0.971034
Target:  5'- gCUGUGUGCUGGCGaggCCAAGccGGCg -3'
miRNA:   3'- -GGCACACGGUCGUgg-GGUUCuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 223867 0.67 0.971034
Target:  5'- uUCGUGcUGCCAGCGaauCCCCGAcGGuaacGGCg -3'
miRNA:   3'- -GGCAC-ACGGUCGU---GGGGUU-CUu---CUGg -5'
13995 5' -54.9 NC_003521.1 + 102797 0.67 0.970195
Target:  5'- cCCGUGcGCCGgcagcgacgcacgcGCACCucgacgCCGAGAucGACCu -3'
miRNA:   3'- -GGCACaCGGU--------------CGUGG------GGUUCUu-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 150729 0.67 0.969911
Target:  5'- gCCGUGggccacguccuggGCCGGCugCCC----GGACUg -3'
miRNA:   3'- -GGCACa------------CGGUCGugGGGuucuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 109850 0.67 0.968168
Target:  5'- aCCGUGcucacUGCCccCACCgCGGuGAAGGCCu -3'
miRNA:   3'- -GGCAC-----ACGGucGUGGgGUU-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 160730 0.67 0.968168
Target:  5'- aUCGUGgucgcgccGUCGGCACCCCcgauGAGcaGAGACa -3'
miRNA:   3'- -GGCACa-------CGGUCGUGGGG----UUC--UUCUGg -5'
13995 5' -54.9 NC_003521.1 + 74698 0.67 0.968168
Target:  5'- gCCGaccUGCCGGcCGCCCUgAAGcAGGCCc -3'
miRNA:   3'- -GGCac-ACGGUC-GUGGGG-UUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 90547 0.67 0.968168
Target:  5'- cCCGcGa--CAGCACCCaCGAGAGG-CCg -3'
miRNA:   3'- -GGCaCacgGUCGUGGG-GUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 157171 0.67 0.968168
Target:  5'- uCCGUguccGUGCC-GCACCUgcaagaGAGAAGcCCg -3'
miRNA:   3'- -GGCA----CACGGuCGUGGGg-----UUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 88336 0.67 0.968168
Target:  5'- gCCGaa-GCgCAGCgacugACCCCAGGAGGugUa -3'
miRNA:   3'- -GGCacaCG-GUCG-----UGGGGUUCUUCugG- -5'
13995 5' -54.9 NC_003521.1 + 85768 0.67 0.968168
Target:  5'- -gGUG-GCCAGCGCCUCGcAGccGuCCa -3'
miRNA:   3'- ggCACaCGGUCGUGGGGU-UCuuCuGG- -5'
13995 5' -54.9 NC_003521.1 + 50291 0.67 0.968168
Target:  5'- gCCGcUGcUGCCGccGCACCucgcuccucagCCAGGGAGGCa -3'
miRNA:   3'- -GGC-AC-ACGGU--CGUGG-----------GGUUCUUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.