miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 239832 0.67 0.954692
Target:  5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3'
miRNA:   3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 238487 0.7 0.865819
Target:  5'- gCGgcccaggGUCAGCAgCCCCAGGAGG-CCg -3'
miRNA:   3'- gGCaca----CGGUCGU-GGGGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 236576 0.67 0.971034
Target:  5'- gCCGUGUGCCaucucacggcAGCcaGCCUCGGGGcuccGACa -3'
miRNA:   3'- -GGCACACGG----------UCG--UGGGGUUCUu---CUGg -5'
13995 5' -54.9 NC_003521.1 + 236253 0.7 0.889389
Target:  5'- aCCGgagGCCGGCguguGCCCCGGccguagugacuccccGggGACCc -3'
miRNA:   3'- -GGCacaCGGUCG----UGGGGUU---------------CuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 233505 0.66 0.980662
Target:  5'- cCCGagccUGUGCCuuCugCUCcuGAGGACCc -3'
miRNA:   3'- -GGC----ACACGGucGugGGGuuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 226694 0.67 0.954692
Target:  5'- aCGUcacGUGCCAGC-CCUUcGGcGGACCc -3'
miRNA:   3'- gGCA---CACGGUCGuGGGGuUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 223867 0.67 0.971034
Target:  5'- uUCGUGcUGCCAGCGaauCCCCGAcGGuaacGGCg -3'
miRNA:   3'- -GGCAC-ACGGUCGU---GGGGUU-CUu---CUGg -5'
13995 5' -54.9 NC_003521.1 + 222169 0.66 0.978518
Target:  5'- cCCGUG-GCCAGCagguccgugcgGCCCCAc----GCCa -3'
miRNA:   3'- -GGCACaCGGUCG-----------UGGGGUucuucUGG- -5'
13995 5' -54.9 NC_003521.1 + 220041 0.66 0.982642
Target:  5'- cUCGUG-GCCcgacAGCGCCaacgCCAGGAAGgacagcACCa -3'
miRNA:   3'- -GGCACaCGG----UCGUGG----GGUUCUUC------UGG- -5'
13995 5' -54.9 NC_003521.1 + 219272 0.66 0.973711
Target:  5'- cCCGcagGgGCUGGCACaugagcgggCCCAuGAAGGCCa -3'
miRNA:   3'- -GGCa--CaCGGUCGUG---------GGGUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 218337 0.69 0.922792
Target:  5'- aCGgugGUGCCGGUguucAUCaCCAGGcAGGCCa -3'
miRNA:   3'- gGCa--CACGGUCG----UGG-GGUUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 215991 0.66 0.973711
Target:  5'- -gGUGcgGCCAGCGCCaCGcaGAGACUg -3'
miRNA:   3'- ggCACa-CGGUCGUGGgGUucUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 215506 0.67 0.971034
Target:  5'- ---cGUGCCGGcCACCU--GGAAGACg -3'
miRNA:   3'- ggcaCACGGUC-GUGGGguUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 215445 0.72 0.810349
Target:  5'- gCCGcggGUGCUGGCGCCaggCCGAGGGaGCCa -3'
miRNA:   3'- -GGCa--CACGGUCGUGG---GGUUCUUcUGG- -5'
13995 5' -54.9 NC_003521.1 + 215144 0.68 0.937801
Target:  5'- aCGaagGCCAGCGUCaCCAGGAcguGGACCa -3'
miRNA:   3'- gGCacaCGGUCGUGG-GGUUCU---UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 215122 0.66 0.980662
Target:  5'- gCGUGU-UCGGUACCagccaCGAGggGGCUu -3'
miRNA:   3'- gGCACAcGGUCGUGGg----GUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 214651 0.68 0.941909
Target:  5'- aCCGUGaugGCCgucuccagcagcAGCAgUCCGuagacgcGGAAGACCa -3'
miRNA:   3'- -GGCACa--CGG------------UCGUgGGGU-------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 213447 0.67 0.958372
Target:  5'- cCCGUG-GCCuGGCcCCCCGGcuGGAG-CCu -3'
miRNA:   3'- -GGCACaCGG-UCGuGGGGUU--CUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 213413 0.67 0.968168
Target:  5'- aCGcUG-GUCAGCACCCgCGAGcAGAUg -3'
miRNA:   3'- gGC-ACaCGGUCGUGGG-GUUCuUCUGg -5'
13995 5' -54.9 NC_003521.1 + 212482 0.66 0.973711
Target:  5'- cCCGUG-GCCcacacGCACauggCCGAcGAGACCa -3'
miRNA:   3'- -GGCACaCGGu----CGUGg---GGUUcUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.