miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 74698 0.67 0.968168
Target:  5'- gCCGaccUGCCGGcCGCCCUgAAGcAGGCCc -3'
miRNA:   3'- -GGCac-ACGGUC-GUGGGG-UUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 194282 0.67 0.968168
Target:  5'- cCCGgcgcgagGCCcugguGCGCCUgGAGAAGACg -3'
miRNA:   3'- -GGCaca----CGGu----CGUGGGgUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 73964 0.67 0.968168
Target:  5'- aCCGUGUGCCuGCugUgCGAGcucauGuCCu -3'
miRNA:   3'- -GGCACACGGuCGugGgGUUCuu---CuGG- -5'
13995 5' -54.9 NC_003521.1 + 70797 0.67 0.968168
Target:  5'- aUCGUGgacGCaCAGCGgCCCGAaGAGGCg -3'
miRNA:   3'- -GGCACa--CG-GUCGUgGGGUUcUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 50291 0.67 0.968168
Target:  5'- gCCGcUGcUGCCGccGCACCucgcuccucagCCAGGGAGGCa -3'
miRNA:   3'- -GGC-AC-ACGGU--CGUGG-----------GGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 213413 0.67 0.968168
Target:  5'- aCGcUG-GUCAGCACCCgCGAGcAGAUg -3'
miRNA:   3'- gGC-ACaCGGUCGUGGG-GUUCuUCUGg -5'
13995 5' -54.9 NC_003521.1 + 164653 0.67 0.966354
Target:  5'- cCCGUGUGUCaaaucaaaccuacguGGUgaACCCCGuGAcgacgAGGCCg -3'
miRNA:   3'- -GGCACACGG---------------UCG--UGGGGUuCU-----UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 126308 0.67 0.96542
Target:  5'- cCCGUGgcggcggugggcacgGCggccacgacggaCAGCACCCagauGAAGGCCa -3'
miRNA:   3'- -GGCACa--------------CG------------GUCGUGGGguu-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 195175 0.67 0.965105
Target:  5'- gUGUGcGCCGG-ACCCCGcGGAG-CCg -3'
miRNA:   3'- gGCACaCGGUCgUGGGGUuCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 119981 0.67 0.965105
Target:  5'- gCCGaGU-CCAGCAUggcaCCCGAGGAGgauACCg -3'
miRNA:   3'- -GGCaCAcGGUCGUG----GGGUUCUUC---UGG- -5'
13995 5' -54.9 NC_003521.1 + 37434 0.67 0.965105
Target:  5'- gCGUG-GCCGGgACCUgAGGc-GACCg -3'
miRNA:   3'- gGCACaCGGUCgUGGGgUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 138616 0.67 0.965105
Target:  5'- -gGUGUGCCAgGUAgUCUcGGAAGACg -3'
miRNA:   3'- ggCACACGGU-CGUgGGGuUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 87727 0.67 0.965105
Target:  5'- cCCGguugagGUGCCAGacgaAgCCCGAGAccagcugcGGACa -3'
miRNA:   3'- -GGCa-----CACGGUCg---UgGGGUUCU--------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 133337 0.67 0.965105
Target:  5'- aCCaGUGUGCUcugGGCGCCggaCGuGGAGAUCa -3'
miRNA:   3'- -GG-CACACGG---UCGUGGg--GUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 149658 0.67 0.965105
Target:  5'- cCUG-GUGCgGGCugCCCGAcaucguGGGCCc -3'
miRNA:   3'- -GGCaCACGgUCGugGGGUUcu----UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 167458 0.67 0.965105
Target:  5'- cCCGUG-GUCAG-AUCCgagaGGGAAGGCCu -3'
miRNA:   3'- -GGCACaCGGUCgUGGGg---UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 115120 0.67 0.964788
Target:  5'- gUCGUGaccGCCGGCGuCUCCAcuacgucGGAcaAGGCCa -3'
miRNA:   3'- -GGCACa--CGGUCGU-GGGGU-------UCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 204938 0.67 0.962842
Target:  5'- gCCGUGgcaccgGCCAGCgcgagacgaaaaaagACagaagcaCCCGAGAGcGACCu -3'
miRNA:   3'- -GGCACa-----CGGUCG---------------UG-------GGGUUCUU-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 206545 0.67 0.961842
Target:  5'- cCCGUG-GCCcGC-CCCCGuGAcaGGACg -3'
miRNA:   3'- -GGCACaCGGuCGuGGGGUuCU--UCUGg -5'
13995 5' -54.9 NC_003521.1 + 148980 0.67 0.961842
Target:  5'- uCCGcGUGCUGGCGCgcaccuucacgCCCGuccAGAuccAGACCg -3'
miRNA:   3'- -GGCaCACGGUCGUG-----------GGGU---UCU---UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.