miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 63680 0.72 0.77515
Target:  5'- uUCGUGUGUCuGCGgCCCuccgacuucAAGAAGAUCa -3'
miRNA:   3'- -GGCACACGGuCGUgGGG---------UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 64747 0.66 0.975475
Target:  5'- gCCGUGgccaagacgccgGCCGGCGCggcaccgggcgauCCCAAGcgccugcAGACCc -3'
miRNA:   3'- -GGCACa-----------CGGUCGUG-------------GGGUUCu------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 68062 0.66 0.978518
Target:  5'- cCCG-GUGgCAGCcagaaugccggGCCCCGcaagaAGAAGAgCa -3'
miRNA:   3'- -GGCaCACgGUCG-----------UGGGGU-----UCUUCUgG- -5'
13995 5' -54.9 NC_003521.1 + 70797 0.67 0.968168
Target:  5'- aUCGUGgacGCaCAGCGgCCCGAaGAGGCg -3'
miRNA:   3'- -GGCACa--CG-GUCGUgGGGUUcUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 72635 0.66 0.982642
Target:  5'- aCCGUGcuggcggGCCAGCAgCUCAucacGcAGACUa -3'
miRNA:   3'- -GGCACa------CGGUCGUgGGGUu---CuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 72797 0.7 0.893297
Target:  5'- aUGUGgGUCucgGGCGCCaCCAAGAaAGACCu -3'
miRNA:   3'- gGCACaCGG---UCGUGG-GGUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 73569 0.69 0.899638
Target:  5'- gCCGUGgUGCgGGCGCUggUCAugaacGAGGACCu -3'
miRNA:   3'- -GGCAC-ACGgUCGUGG--GGUu----CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 73964 0.67 0.968168
Target:  5'- aCCGUGUGCCuGCugUgCGAGcucauGuCCu -3'
miRNA:   3'- -GGCACACGGuCGugGgGUUCuu---CuGG- -5'
13995 5' -54.9 NC_003521.1 + 74698 0.67 0.968168
Target:  5'- gCCGaccUGCCGGcCGCCCUgAAGcAGGCCc -3'
miRNA:   3'- -GGCac-ACGGUC-GUGGGG-UUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 75013 0.66 0.982642
Target:  5'- aUCGUGgGCCAGgACCCCuacugcGAcGGCa -3'
miRNA:   3'- -GGCACaCGGUCgUGGGGuu----CUuCUGg -5'
13995 5' -54.9 NC_003521.1 + 75241 0.69 0.90576
Target:  5'- ---cGUGCCcuucauGCACgCCgAGGAGGGCCg -3'
miRNA:   3'- ggcaCACGGu-----CGUG-GGgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 77624 0.73 0.718907
Target:  5'- cCCGUGa--CGGCGCCggCCGAGAGGAUCg -3'
miRNA:   3'- -GGCACacgGUCGUGG--GGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 77726 0.76 0.580841
Target:  5'- gUCGUGgcGCUGGCGCCCgAGGAcGGGCCg -3'
miRNA:   3'- -GGCACa-CGGUCGUGGGgUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 80144 0.67 0.961842
Target:  5'- gCCG-GUGCU-GCGCgUCCAgccgcuGGAGGGCCa -3'
miRNA:   3'- -GGCaCACGGuCGUG-GGGU------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 85486 0.75 0.660138
Target:  5'- gCCG-GUGCCcGCGCCCCcgccGGGACCc -3'
miRNA:   3'- -GGCaCACGGuCGUGGGGuuc-UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 85768 0.67 0.968168
Target:  5'- -gGUG-GCCAGCGCCUCGcAGccGuCCa -3'
miRNA:   3'- ggCACaCGGUCGUGGGGU-UCuuCuGG- -5'
13995 5' -54.9 NC_003521.1 + 87351 0.66 0.982642
Target:  5'- cCCGa--GCCGGaGCCCgAGGAggAGGCCg -3'
miRNA:   3'- -GGCacaCGGUCgUGGGgUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 87458 0.71 0.827066
Target:  5'- aCGggcUGUGCCGGCACC---AGAAGAUCu -3'
miRNA:   3'- gGC---ACACGGUCGUGGgguUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 87483 0.67 0.960478
Target:  5'- ----cUGCCAGCugcugaacacguuCCCCGuGAAGGCCg -3'
miRNA:   3'- ggcacACGGUCGu------------GGGGUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 87727 0.67 0.965105
Target:  5'- cCCGguugagGUGCCAGacgaAgCCCGAGAccagcugcGGACa -3'
miRNA:   3'- -GGCa-----CACGGUCg---UgGGGUUCU--------UCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.