miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14004 5' -52.6 NC_003521.1 + 39026 0.66 0.995617
Target:  5'- cGUCagcaGCGacggCGGGugUGGcGCCGAGGc -3'
miRNA:   3'- -CAGg---UGCaua-GCCCugACC-UGGUUUC- -5'
14004 5' -52.6 NC_003521.1 + 239254 0.66 0.995617
Target:  5'- cGUCagcaGCGacggCGGGugUGGcGCCGAGGc -3'
miRNA:   3'- -CAGg---UGCaua-GCCCugACC-UGGUUUC- -5'
14004 5' -52.6 NC_003521.1 + 148402 0.66 0.99492
Target:  5'- gGUCCACGUGcgaGGGAgccaUGGugCGGGc -3'
miRNA:   3'- -CAGGUGCAUag-CCCUg---ACCugGUUUc -5'
14004 5' -52.6 NC_003521.1 + 1166 0.66 0.994771
Target:  5'- -gCCACGgcgccgccuaCGGGACUGGACg---- -3'
miRNA:   3'- caGGUGCaua-------GCCCUGACCUGguuuc -5'
14004 5' -52.6 NC_003521.1 + 201394 0.66 0.994771
Target:  5'- -gCCACGgcgccgccuaCGGGACUGGACg---- -3'
miRNA:   3'- caGGUGCaua-------GCCCUGACCUGguuuc -5'
14004 5' -52.6 NC_003521.1 + 151064 0.66 0.994136
Target:  5'- cGUCCcUGUGcgcgCGGGuuuCUGGACCGc-- -3'
miRNA:   3'- -CAGGuGCAUa---GCCCu--GACCUGGUuuc -5'
14004 5' -52.6 NC_003521.1 + 157356 0.66 0.994136
Target:  5'- -aCCGCGaaaugCuGGACgUGGGCCAGAGu -3'
miRNA:   3'- caGGUGCaua--GcCCUG-ACCUGGUUUC- -5'
14004 5' -52.6 NC_003521.1 + 19650 0.66 0.993257
Target:  5'- cUCCAuCGUGUgccUGGGgcugcugcGCUGGGCCGAGc -3'
miRNA:   3'- cAGGU-GCAUA---GCCC--------UGACCUGGUUUc -5'
14004 5' -52.6 NC_003521.1 + 171293 0.67 0.991184
Target:  5'- aUCCGCGUGggcuggaaggCGGuGCUGGGCCu--- -3'
miRNA:   3'- cAGGUGCAUa---------GCCcUGACCUGGuuuc -5'
14004 5' -52.6 NC_003521.1 + 201348 0.67 0.988638
Target:  5'- cGUCCACGaggCGGcGACgGGACaCGAAc -3'
miRNA:   3'- -CAGGUGCauaGCC-CUGaCCUG-GUUUc -5'
14004 5' -52.6 NC_003521.1 + 1120 0.67 0.988638
Target:  5'- cGUCCACGaggCGGcGACgGGACaCGAAc -3'
miRNA:   3'- -CAGGUGCauaGCC-CUGaCCUG-GUUUc -5'
14004 5' -52.6 NC_003521.1 + 129808 0.68 0.981871
Target:  5'- -aCCGCGUcaaGUUGGuGCUGGGCCGc-- -3'
miRNA:   3'- caGGUGCA---UAGCCcUGACCUGGUuuc -5'
14004 5' -52.6 NC_003521.1 + 52387 0.68 0.981871
Target:  5'- aGUCCGCGUGUCGGccauGACUacuGCCAGc- -3'
miRNA:   3'- -CAGGUGCAUAGCC----CUGAcc-UGGUUuc -5'
14004 5' -52.6 NC_003521.1 + 176067 0.68 0.981669
Target:  5'- aGUCCGCGUGUCagucucuGGGAgUUGGAaaGGGGg -3'
miRNA:   3'- -CAGGUGCAUAG-------CCCU-GACCUggUUUC- -5'
14004 5' -52.6 NC_003521.1 + 102584 0.69 0.972449
Target:  5'- -aCUGCGUcUCGGGGCUGGcgcugGCCAc-- -3'
miRNA:   3'- caGGUGCAuAGCCCUGACC-----UGGUuuc -5'
14004 5' -52.6 NC_003521.1 + 238692 0.69 0.969623
Target:  5'- gGUCgGCGgccgUGGGACguuGACCAGAGg -3'
miRNA:   3'- -CAGgUGCaua-GCCCUGac-CUGGUUUC- -5'
14004 5' -52.6 NC_003521.1 + 38465 0.69 0.969623
Target:  5'- gGUCgGCGgccgUGGGACguuGACCAGAGg -3'
miRNA:   3'- -CAGgUGCaua-GCCCUGac-CUGGUUUC- -5'
14004 5' -52.6 NC_003521.1 + 133209 0.69 0.966597
Target:  5'- -aCCGCG-GUCGGGGCgcgGGuuCAGGGg -3'
miRNA:   3'- caGGUGCaUAGCCCUGa--CCugGUUUC- -5'
14004 5' -52.6 NC_003521.1 + 56962 0.69 0.966597
Target:  5'- ---aACGUGUUGGcgaGACUGGACCAGu- -3'
miRNA:   3'- caggUGCAUAGCC---CUGACCUGGUUuc -5'
14004 5' -52.6 NC_003521.1 + 105363 0.69 0.966597
Target:  5'- cGUCCGCGUcgacggGGGGC-GGACCGAc- -3'
miRNA:   3'- -CAGGUGCAuag---CCCUGaCCUGGUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.