miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 19106 0.68 0.98337
Target:  5'- gGGGAGGGAgacGACGCGggugGCGGgCCGCc-- -3'
miRNA:   3'- -CUUUCCCUa--UUGCGC----UGUC-GGCGuug -5'
14009 3' -51.5 NC_003521.1 + 19445 0.71 0.931428
Target:  5'- aGAAAGGGGggaGGCGCGGCGggaccauGUCGCuGCg -3'
miRNA:   3'- -CUUUCCCUa--UUGCGCUGU-------CGGCGuUG- -5'
14009 3' -51.5 NC_003521.1 + 22173 0.73 0.883083
Target:  5'- gGAGAGGGAcGAgGCGccgcCGGCCGUGGCc -3'
miRNA:   3'- -CUUUCCCUaUUgCGCu---GUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 25543 0.66 0.997692
Target:  5'- gGAGAGcgacGGcgGACGCuguugugcaGGCGGCCGCGGg -3'
miRNA:   3'- -CUUUC----CCuaUUGCG---------CUGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 28073 0.67 0.991037
Target:  5'- aGGAGGGGGgagGACGaCGGCggggaAGCCGagcaGGCg -3'
miRNA:   3'- -CUUUCCCUa--UUGC-GCUG-----UCGGCg---UUG- -5'
14009 3' -51.5 NC_003521.1 + 28374 0.67 0.992164
Target:  5'- ---uGGuuGAUGGCGUGGCAcguGUCGCGACg -3'
miRNA:   3'- cuuuCC--CUAUUGCGCUGU---CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 29994 0.69 0.974292
Target:  5'- gGGAGGGGAcgAGCGCcACGGaCCGCu-- -3'
miRNA:   3'- -CUUUCCCUa-UUGCGcUGUC-GGCGuug -5'
14009 3' -51.5 NC_003521.1 + 30994 0.68 0.98337
Target:  5'- gGAucGGGAUGGgGCGACGacggcGCCgGCGAg -3'
miRNA:   3'- -CUuuCCCUAUUgCGCUGU-----CGG-CGUUg -5'
14009 3' -51.5 NC_003521.1 + 31292 0.73 0.853111
Target:  5'- ---cGGGcgcAUAAcCGCGGCAGCgGCGACg -3'
miRNA:   3'- cuuuCCC---UAUU-GCGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 33662 0.69 0.974292
Target:  5'- aGAgcGGGAUccaGCGAcCGGCCGUGGCc -3'
miRNA:   3'- -CUuuCCCUAuugCGCU-GUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 33871 0.67 0.99408
Target:  5'- aGAGAGGGAaGGCGCcaaguuCAaaCCGCGACa -3'
miRNA:   3'- -CUUUCCCUaUUGCGcu----GUc-GGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 36972 0.69 0.979197
Target:  5'- cGGAGcGGGUGcucgGCgGCGACAuCCGCGACg -3'
miRNA:   3'- cUUUC-CCUAU----UG-CGCUGUcGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 37536 0.72 0.915425
Target:  5'- --uGGGGGUGGgcaGCGGgGGUCGCGGCg -3'
miRNA:   3'- cuuUCCCUAUUg--CGCUgUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 38489 0.67 0.993175
Target:  5'- cAGAGGaGGUAGCacCGGCAGCaguuccaGCAGCa -3'
miRNA:   3'- cUUUCC-CUAUUGc-GCUGUCGg------CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 39003 0.71 0.941737
Target:  5'- --uGGuGGAUGugGCGcugcACGGCCGuCAGCa -3'
miRNA:   3'- cuuUC-CCUAUugCGC----UGUCGGC-GUUG- -5'
14009 3' -51.5 NC_003521.1 + 40425 0.71 0.936961
Target:  5'- --cAGGGAggccgaaGCGGCGGCCGgAGCc -3'
miRNA:   3'- cuuUCCCUauug---CGCUGUCGGCgUUG- -5'
14009 3' -51.5 NC_003521.1 + 40469 0.68 0.986717
Target:  5'- cGGAAcGGAUAGaugugucCGCGGCGcgccacggcGCCGCAGCg -3'
miRNA:   3'- -CUUUcCCUAUU-------GCGCUGU---------CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 40705 0.66 0.99623
Target:  5'- cGAAGGuGAgugugugcUGGCGCG-CGGCUGUGACu -3'
miRNA:   3'- cUUUCC-CU--------AUUGCGCuGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 42602 0.68 0.988402
Target:  5'- -----uGAUAGCGCGACAG-CGUGACg -3'
miRNA:   3'- cuuuccCUAUUGCGCUGUCgGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 42936 0.69 0.968597
Target:  5'- aGAGGGGAacgacaaacaUGACGaGACAGCCGgaGGCa -3'
miRNA:   3'- cUUUCCCU----------AUUGCgCUGUCGGCg-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.