miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 103 0.71 0.936961
Target:  5'- --cAGGGAggccgaaGCGGCGGCCGgAGCc -3'
miRNA:   3'- cuuUCCCUauug---CGCUGUCGGCgUUG- -5'
14009 3' -51.5 NC_003521.1 + 383 0.66 0.99623
Target:  5'- cGAAGGuGAgugugugcUGGCGCG-CGGCUGUGACu -3'
miRNA:   3'- cUUUCC-CU--------AUUGCGCuGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 1920 0.72 0.915425
Target:  5'- --cGGGGAUGGCGcCGAgcCAGaCCGCAGg -3'
miRNA:   3'- cuuUCCCUAUUGC-GCU--GUC-GGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 4764 0.66 0.996784
Target:  5'- gGAAAcGGGAUcaGACGCGGguacaucauCAGCUGCcuGACc -3'
miRNA:   3'- -CUUU-CCCUA--UUGCGCU---------GUCGGCG--UUG- -5'
14009 3' -51.5 NC_003521.1 + 5315 0.71 0.946272
Target:  5'- --cGGGGGcGGCGUGccccgcCGGCCGCGACu -3'
miRNA:   3'- cuuUCCCUaUUGCGCu-----GUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 5775 0.68 0.985203
Target:  5'- ---cGGGAUGACG-GACGGCCuCAu- -3'
miRNA:   3'- cuuuCCCUAUUGCgCUGUCGGcGUug -5'
14009 3' -51.5 NC_003521.1 + 6070 0.83 0.38365
Target:  5'- cGAAGGGA--AUGCGACGGCCGguGCg -3'
miRNA:   3'- cUUUCCCUauUGCGCUGUCGGCguUG- -5'
14009 3' -51.5 NC_003521.1 + 6374 0.66 0.996784
Target:  5'- cGGucGGGGU--CGCGGaggggcGCCGCAGCu -3'
miRNA:   3'- -CUuuCCCUAuuGCGCUgu----CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 7732 0.66 0.995599
Target:  5'- gGGGAGGGcg-GCGCGAgCGGCggagGCGGCg -3'
miRNA:   3'- -CUUUCCCuauUGCGCU-GUCGg---CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 7850 0.7 0.965436
Target:  5'- cGAGGGGGUGGCG-GACGGCCu---- -3'
miRNA:   3'- cUUUCCCUAUUGCgCUGUCGGcguug -5'
14009 3' -51.5 NC_003521.1 + 7996 0.66 0.996784
Target:  5'- -cGGGGGAgguacCGgGGCAgcGCCGUAGCu -3'
miRNA:   3'- cuUUCCCUauu--GCgCUGU--CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 8739 0.69 0.975844
Target:  5'- --cGGGGAcgcggaaaaacgaGACGCGACAGCCGaugguACa -3'
miRNA:   3'- cuuUCCCUa------------UUGCGCUGUCGGCgu---UG- -5'
14009 3' -51.5 NC_003521.1 + 10503 0.73 0.890021
Target:  5'- --cGGGGAUGGCGUGGCcccccaGGCggCGCGACa -3'
miRNA:   3'- cuuUCCCUAUUGCGCUG------UCG--GCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 13912 0.69 0.979197
Target:  5'- cGGAGGGGGc--CGCGGaGGCCGCGc- -3'
miRNA:   3'- -CUUUCCCUauuGCGCUgUCGGCGUug -5'
14009 3' -51.5 NC_003521.1 + 14742 0.72 0.921175
Target:  5'- ---uGGGcGUGACGgGcCGGCCGCGGCc -3'
miRNA:   3'- cuuuCCC-UAUUGCgCuGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 15328 0.68 0.981371
Target:  5'- --cGGGuGAUcAGCGCGcuggugcaGCAGUCGCGACu -3'
miRNA:   3'- cuuUCC-CUA-UUGCGC--------UGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 15672 0.69 0.968597
Target:  5'- -cGAGGuGGU-GCGCGACugGGuCCGCAACc -3'
miRNA:   3'- cuUUCC-CUAuUGCGCUG--UC-GGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 16969 0.69 0.974292
Target:  5'- -cGAGGGAcAGCcgcaGCaGCAGCCGCAGg -3'
miRNA:   3'- cuUUCCCUaUUG----CGcUGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 17030 0.66 0.997692
Target:  5'- gGGAAGaGGAgcGACGacaaCGGCAGCaccaGCAGCg -3'
miRNA:   3'- -CUUUC-CCUa-UUGC----GCUGUCGg---CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 18975 0.66 0.995599
Target:  5'- aGGAGGGGGUcgagGACGCG-CcGC-GCGACg -3'
miRNA:   3'- -CUUUCCCUA----UUGCGCuGuCGgCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.