miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 188367 1.11 0.008905
Target:  5'- uGAAAGGGAUAACGCGACAGCCGCAACa -3'
miRNA:   3'- -CUUUCCCUAUUGCGCUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 6070 0.83 0.38365
Target:  5'- cGAAGGGA--AUGCGACGGCCGguGCg -3'
miRNA:   3'- cUUUCCCUauUGCGCUGUCGGCguUG- -5'
14009 3' -51.5 NC_003521.1 + 92298 0.8 0.521784
Target:  5'- --cGGGGAaGGCGCGggaggaggcGCAGCCGCGGCa -3'
miRNA:   3'- cuuUCCCUaUUGCGC---------UGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 123924 0.78 0.654595
Target:  5'- cGAAAGGGGUcucccgccGGCGCG-CcGCCGCAGCc -3'
miRNA:   3'- -CUUUCCCUA--------UUGCGCuGuCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 147457 0.77 0.664904
Target:  5'- cGGAAGuagcGGAUGGCGCGACAGgCCGUGAa -3'
miRNA:   3'- -CUUUC----CCUAUUGCGCUGUC-GGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 92002 0.77 0.685431
Target:  5'- cGGAGcGGGAgcggcgaGGCGCGGCGGCgGCGGCg -3'
miRNA:   3'- -CUUU-CCCUa------UUGCGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 213123 0.77 0.695632
Target:  5'- ---uGGGuGUGGCGUGguGCGGCCGCAGCg -3'
miRNA:   3'- cuuuCCC-UAUUGCGC--UGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 58881 0.76 0.715862
Target:  5'- cGAGAGG--UGGCGCGGCgAGUCGCAGCc -3'
miRNA:   3'- -CUUUCCcuAUUGCGCUG-UCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 226415 0.76 0.715862
Target:  5'- cGAuAGGcGAUcuccgAGCGCGACAcGCCGUAGCg -3'
miRNA:   3'- -CUuUCC-CUA-----UUGCGCUGU-CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 191263 0.76 0.7358
Target:  5'- --cGGGGAa---GCGGCAGCCGCAGa -3'
miRNA:   3'- cuuUCCCUauugCGCUGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 166855 0.75 0.764993
Target:  5'- --cAGGcGGUGGCGCGGCGGgCGCAGg -3'
miRNA:   3'- cuuUCC-CUAUUGCGCUGUCgGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 58393 0.75 0.778261
Target:  5'- cAGGGGGAUcugccgcggccgcguGAUGCGGCgguugacgaAGCCGCAGCg -3'
miRNA:   3'- cUUUCCCUA---------------UUGCGCUG---------UCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 131129 0.75 0.802188
Target:  5'- gGGAAGGGAcAGCGCGACcccucGGCCGaucGCa -3'
miRNA:   3'- -CUUUCCCUaUUGCGCUG-----UCGGCgu-UG- -5'
14009 3' -51.5 NC_003521.1 + 199479 0.75 0.802188
Target:  5'- cGAcGGuGGAUGACGCGAUAGCgaucgGCGGCg -3'
miRNA:   3'- -CUuUC-CCUAUUGCGCUGUCGg----CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 192632 0.74 0.811117
Target:  5'- --cGGGGAucucgUAACGCGACGGCgGgAACu -3'
miRNA:   3'- cuuUCCCU-----AUUGCGCUGUCGgCgUUG- -5'
14009 3' -51.5 NC_003521.1 + 131212 0.74 0.811117
Target:  5'- cGAGAGGGGccGGCGCcagaGACAGCguCGCGACg -3'
miRNA:   3'- -CUUUCCCUa-UUGCG----CUGUCG--GCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 155470 0.74 0.817269
Target:  5'- aGGAGGGGGUGAgagagacgccggccUGCGGCGGgCCGCGGg -3'
miRNA:   3'- -CUUUCCCUAUU--------------GCGCUGUC-GGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 108048 0.74 0.81988
Target:  5'- ---cGGGAUGACGCGACGGaCCaGCu-- -3'
miRNA:   3'- cuuuCCCUAUUGCGCUGUC-GG-CGuug -5'
14009 3' -51.5 NC_003521.1 + 99189 0.74 0.828469
Target:  5'- -uGAGGGuc-ACGUcgguGACGGCCGCGGCg -3'
miRNA:   3'- cuUUCCCuauUGCG----CUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 123579 0.74 0.836875
Target:  5'- ---cGGGAUGGCgGCGGCGccgggagccGCCGCGGCc -3'
miRNA:   3'- cuuuCCCUAUUG-CGCUGU---------CGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.