miRNA display CGI


Results 1 - 20 of 253 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 202147 0.72 0.915425
Target:  5'- --cGGGGAUGGCGcCGAgcCAGaCCGCAGg -3'
miRNA:   3'- cuuUCCCUAUUGC-GCU--GUC-GGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 57697 0.73 0.853111
Target:  5'- --cGGGGA---UGCGACcGCCGCAACc -3'
miRNA:   3'- cuuUCCCUauuGCGCUGuCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 43472 0.73 0.875918
Target:  5'- ---cGGGccAGCGCGGCGGCCGUg-- -3'
miRNA:   3'- cuuuCCCuaUUGCGCUGUCGGCGuug -5'
14009 3' -51.5 NC_003521.1 + 112343 0.73 0.882377
Target:  5'- --cGGGGugauugccacaccGUAcgcACGCGGCGGCUGCGGCg -3'
miRNA:   3'- cuuUCCC-------------UAU---UGCGCUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 77685 0.73 0.889338
Target:  5'- --cGGGGGgcACGCuggcgaaGACAGCCGUGGCg -3'
miRNA:   3'- cuuUCCCUauUGCG-------CUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 10503 0.73 0.890021
Target:  5'- --cGGGGAUGGCGUGGCcccccaGGCggCGCGACa -3'
miRNA:   3'- cuuUCCCUAUUGCGCUG------UCG--GCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 150563 0.72 0.896728
Target:  5'- ---cGGGugGugGCGGCGGCgGCGGCg -3'
miRNA:   3'- cuuuCCCuaUugCGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 139568 0.72 0.905721
Target:  5'- uGAuGGGGAUGAugaaccaggucuugcCGUGGC-GCCGCGGCa -3'
miRNA:   3'- -CUuUCCCUAUU---------------GCGCUGuCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 209558 0.72 0.909432
Target:  5'- ---cGGGGUGGCgGCGACGGUgGCGGg -3'
miRNA:   3'- cuuuCCCUAUUG-CGCUGUCGgCGUUg -5'
14009 3' -51.5 NC_003521.1 + 192632 0.74 0.811117
Target:  5'- --cGGGGAucucgUAACGCGACGGCgGgAACu -3'
miRNA:   3'- cuuUCCCU-----AUUGCGCUGUCGgCgUUG- -5'
14009 3' -51.5 NC_003521.1 + 131212 0.74 0.811117
Target:  5'- cGAGAGGGGccGGCGCcagaGACAGCguCGCGACg -3'
miRNA:   3'- -CUUUCCCUa-UUGCG----CUGUCG--GCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 131129 0.75 0.802188
Target:  5'- gGGAAGGGAcAGCGCGACcccucGGCCGaucGCa -3'
miRNA:   3'- -CUUUCCCUaUUGCGCUG-----UCGGCgu-UG- -5'
14009 3' -51.5 NC_003521.1 + 147457 0.77 0.664904
Target:  5'- cGGAAGuagcGGAUGGCGCGACAGgCCGUGAa -3'
miRNA:   3'- -CUUUC----CCUAUUGCGCUGUC-GGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 92002 0.77 0.685431
Target:  5'- cGGAGcGGGAgcggcgaGGCGCGGCGGCgGCGGCg -3'
miRNA:   3'- -CUUU-CCCUa------UUGCGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 213123 0.77 0.695632
Target:  5'- ---uGGGuGUGGCGUGguGCGGCCGCAGCg -3'
miRNA:   3'- cuuuCCC-UAUUGCGC--UGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 58881 0.76 0.715862
Target:  5'- cGAGAGG--UGGCGCGGCgAGUCGCAGCc -3'
miRNA:   3'- -CUUUCCcuAUUGCGCUG-UCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 226415 0.76 0.715862
Target:  5'- cGAuAGGcGAUcuccgAGCGCGACAcGCCGUAGCg -3'
miRNA:   3'- -CUuUCC-CUA-----UUGCGCUGU-CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 191263 0.76 0.7358
Target:  5'- --cGGGGAa---GCGGCAGCCGCAGa -3'
miRNA:   3'- cuuUCCCUauugCGCUGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 166855 0.75 0.764993
Target:  5'- --cAGGcGGUGGCGCGGCGGgCGCAGg -3'
miRNA:   3'- cuuUCC-CUAUUGCGCUGUCgGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 58393 0.75 0.778261
Target:  5'- cAGGGGGAUcugccgcggccgcguGAUGCGGCgguugacgaAGCCGCAGCg -3'
miRNA:   3'- cUUUCCCUA---------------UUGCGCUG---------UCGGCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.