miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 150617 0.66 0.997269
Target:  5'- ---uGGGcUGuUGCGGCGGCUGCuGCg -3'
miRNA:   3'- cuuuCCCuAUuGCGCUGUCGGCGuUG- -5'
14009 3' -51.5 NC_003521.1 + 150645 0.66 0.994653
Target:  5'- --cGGGGGcguGCGCGACgaaggcggcucuccGGCgGCGGCg -3'
miRNA:   3'- cuuUCCCUau-UGCGCUG--------------UCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 153112 0.66 0.994885
Target:  5'- ---cGGGcgcGCGCGACGGCagcagGCGGCu -3'
miRNA:   3'- cuuuCCCuauUGCGCUGUCGg----CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 17030 0.66 0.997692
Target:  5'- gGGAAGaGGAgcGACGacaaCGGCAGCaccaGCAGCg -3'
miRNA:   3'- -CUUUC-CCUa-UUGC----GCUGUCGg---CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 6374 0.66 0.996784
Target:  5'- cGGucGGGGU--CGCGGaggggcGCCGCAGCu -3'
miRNA:   3'- -CUuuCCCUAuuGCGCUgu----CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 209726 0.66 0.99623
Target:  5'- -cGAGGaGGUcgUGCG-CAGCgGCAGCc -3'
miRNA:   3'- cuUUCC-CUAuuGCGCuGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 128491 0.66 0.996784
Target:  5'- -uGAGGcuguGCGCGcCGGCCuGCGACa -3'
miRNA:   3'- cuUUCCcuauUGCGCuGUCGG-CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 25543 0.66 0.997692
Target:  5'- gGAGAGcgacGGcgGACGCuguugugcaGGCGGCCGCGGg -3'
miRNA:   3'- -CUUUC----CCuaUUGCG---------CUGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 221896 0.66 0.99646
Target:  5'- uGGGGcGGAUugccggcGCGCGGCGccacccuucggggcuGCCGCGGCg -3'
miRNA:   3'- cUUUC-CCUAu------UGCGCUGU---------------CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 167666 0.66 0.996784
Target:  5'- gGAGAGGaGUGACGUGcucGCGGuuGCggUg -3'
miRNA:   3'- -CUUUCCcUAUUGCGC---UGUCggCGuuG- -5'
14009 3' -51.5 NC_003521.1 + 55752 0.66 0.997692
Target:  5'- ---cGGGcggcaGCGACAGgCGCGGCc -3'
miRNA:   3'- cuuuCCCuauugCGCUGUCgGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 95130 0.66 0.99623
Target:  5'- -uAAGaGGAUAGgGUaaGGCGGCCGCGccgACg -3'
miRNA:   3'- cuUUC-CCUAUUgCG--CUGUCGGCGU---UG- -5'
14009 3' -51.5 NC_003521.1 + 140012 0.66 0.997269
Target:  5'- -cGAGuGGUAGuCGCGguaGCGGCCGCAGa -3'
miRNA:   3'- cuUUCcCUAUU-GCGC---UGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 383 0.66 0.99623
Target:  5'- cGAAGGuGAgugugugcUGGCGCG-CGGCUGUGACu -3'
miRNA:   3'- cUUUCC-CU--------AUUGCGCuGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 73709 0.66 0.997269
Target:  5'- ---cGuGGAgcGCaGCGACccgGGCCGCGACc -3'
miRNA:   3'- cuuuC-CCUauUG-CGCUG---UCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 46070 0.66 0.995599
Target:  5'- ---cGGGAUGAgguCGCGAC-GCC-CGGCg -3'
miRNA:   3'- cuuuCCCUAUU---GCGCUGuCGGcGUUG- -5'
14009 3' -51.5 NC_003521.1 + 102483 0.66 0.99623
Target:  5'- aGAGAGGcccGAgacgccguCGCG-CAGCCGCAGg -3'
miRNA:   3'- -CUUUCC---CUauu-----GCGCuGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 78470 0.66 0.997692
Target:  5'- aGAcGGGGGgcuGCGCGcccacgcccGCAGUCGCcGCc -3'
miRNA:   3'- -CUuUCCCUau-UGCGC---------UGUCGGCGuUG- -5'
14009 3' -51.5 NC_003521.1 + 68674 0.66 0.99623
Target:  5'- aGAgcGuGGAaGAgGCGGCcauguGCCGCGACg -3'
miRNA:   3'- -CUuuC-CCUaUUgCGCUGu----CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 165014 0.66 0.997269
Target:  5'- -cGAGGaGGc--CGCGAUcGCCGCGGCu -3'
miRNA:   3'- cuUUCC-CUauuGCGCUGuCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.