Results 21 - 40 of 143 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 219046 | 0.66 | 0.815504 |
Target: 5'- aCCGCCACG-GAcaGGcACgCCACggcgCCCAg -3' miRNA: 3'- -GGCGGUGCgCUa-CC-UGgGGUGa---GGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 119241 | 0.66 | 0.815504 |
Target: 5'- aCGCCGCGCuugaacaggugGAUGGugCCCAguaUCUg- -3' miRNA: 3'- gGCGGUGCG-----------CUACCugGGGUg--AGGgu -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 114246 | 0.66 | 0.853983 |
Target: 5'- aCCGgCACGaCGgcGGcuUCCCGCUgCCCAc -3' miRNA: 3'- -GGCgGUGC-GCuaCCu-GGGGUGA-GGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 190284 | 0.66 | 0.815504 |
Target: 5'- uCCGCC-UGCGAUacugccgcGaACCCCGCggCCCAu -3' miRNA: 3'- -GGCGGuGCGCUA--------CcUGGGGUGa-GGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 222559 | 0.66 | 0.815504 |
Target: 5'- cCCGUCGCGgGcaGGuCCCCACcaccgcucgUCCCGa -3' miRNA: 3'- -GGCGGUGCgCuaCCuGGGGUG---------AGGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 213349 | 0.66 | 0.853983 |
Target: 5'- aCCGCCACaUGAcGGACCUgGCcagCCUg -3' miRNA: 3'- -GGCGGUGcGCUaCCUGGGgUGa--GGGu -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 208945 | 0.66 | 0.853983 |
Target: 5'- gCgGCCugGCGGUGcGGuaCCGCUCgCAc -3' miRNA: 3'- -GgCGGugCGCUAC-CUggGGUGAGgGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 22750 | 0.66 | 0.826676 |
Target: 5'- gCCGCCGCcucgcugugcuucgaGaCGGUGGACCUCAuCUaCCUg -3' miRNA: 3'- -GGCGGUG---------------C-GCUACCUGGGGU-GA-GGGu -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 210235 | 0.66 | 0.846613 |
Target: 5'- aCCGUCAgCGCGGacggcacuUGGaccuGCCCUAC-CCCGa -3' miRNA: 3'- -GGCGGU-GCGCU--------ACC----UGGGGUGaGGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 60689 | 0.66 | 0.821924 |
Target: 5'- gCgGCCGCGCGggGGACCCgggggcggcgcggguCGCaccacgccgcugcccUCCCu -3' miRNA: 3'- -GgCGGUGCGCuaCCUGGG---------------GUG---------------AGGGu -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 225266 | 0.66 | 0.831373 |
Target: 5'- gUGUCGCGUGAaggUGGGCgCCCccucUUCCCAg -3' miRNA: 3'- gGCGGUGCGCU---ACCUG-GGGu---GAGGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 117146 | 0.66 | 0.823514 |
Target: 5'- aCCGCCACGCcgcaGcGCgCCgGCUCCCu -3' miRNA: 3'- -GGCGGUGCGcua-CcUG-GGgUGAGGGu -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 134615 | 0.66 | 0.82272 |
Target: 5'- gCGCCGCGCacucggaGAUGGccACCUCggaGCUCUCGg -3' miRNA: 3'- gGCGGUGCG-------CUACC--UGGGG---UGAGGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 142565 | 0.66 | 0.838312 |
Target: 5'- cCCGCCAggcucgccgugccCGCcGUGGccgcCCCCGcCUCCCc -3' miRNA: 3'- -GGCGGU-------------GCGcUACCu---GGGGU-GAGGGu -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 190059 | 0.66 | 0.834473 |
Target: 5'- aCCGCCGCGCGGucuucacguacguucUGG--CCCGCUgCUg -3' miRNA: 3'- -GGCGGUGCGCU---------------ACCugGGGUGAgGGu -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 234341 | 0.66 | 0.831373 |
Target: 5'- aCCGCCucCGCuGccGGACCUgcCUCCCGu -3' miRNA: 3'- -GGCGGu-GCG-CuaCCUGGGguGAGGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 14447 | 0.66 | 0.815504 |
Target: 5'- aCgGCCcUGCGgcGGcgucaGCCgCCGCUCCCGc -3' miRNA: 3'- -GgCGGuGCGCuaCC-----UGG-GGUGAGGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 39691 | 0.67 | 0.764647 |
Target: 5'- aCGCCguGCGCcaGAUGGugCCCAUggcuugguaUUCCAg -3' miRNA: 3'- gGCGG--UGCG--CUACCugGGGUG---------AGGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 220902 | 0.67 | 0.764647 |
Target: 5'- uCUGCUGCgGCGuccaGGACCaccagCCGCUCCCGc -3' miRNA: 3'- -GGCGGUG-CGCua--CCUGG-----GGUGAGGGU- -5' |
|||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 212783 | 0.67 | 0.764647 |
Target: 5'- cCCGCCucUGU--UGGGUCCCGCUCCCc -3' miRNA: 3'- -GGCGGu-GCGcuACCUGGGGUGAGGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home