miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 5' -60.7 NC_003521.1 + 190284 0.66 0.815504
Target:  5'- uCCGCC-UGCGAUacugccgcGaACCCCGCggCCCAu -3'
miRNA:   3'- -GGCGGuGCGCUA--------CcUGGGGUGa-GGGU- -5'
14009 5' -60.7 NC_003521.1 + 126973 0.66 0.846613
Target:  5'- gCGCCGuCGuCGccGGccGCCCCGCUgCCGc -3'
miRNA:   3'- gGCGGU-GC-GCuaCC--UGGGGUGAgGGU- -5'
14009 5' -60.7 NC_003521.1 + 44149 0.66 0.846613
Target:  5'- -aGCCGCGacauccuGGUGGACCUgCGCaCCCAg -3'
miRNA:   3'- ggCGGUGCg------CUACCUGGG-GUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 204978 0.66 0.831373
Target:  5'- cUCGCC-CGCGAUGaACUCUACaUCCUc -3'
miRNA:   3'- -GGCGGuGCGCUACcUGGGGUG-AGGGu -5'
14009 5' -60.7 NC_003521.1 + 219046 0.66 0.815504
Target:  5'- aCCGCCACG-GAcaGGcACgCCACggcgCCCAg -3'
miRNA:   3'- -GGCGGUGCgCUa-CC-UGgGGUGa---GGGU- -5'
14009 5' -60.7 NC_003521.1 + 190059 0.66 0.834473
Target:  5'- aCCGCCGCGCGGucuucacguacguucUGG--CCCGCUgCUg -3'
miRNA:   3'- -GGCGGUGCGCU---------------ACCugGGGUGAgGGu -5'
14009 5' -60.7 NC_003521.1 + 134615 0.66 0.82272
Target:  5'- gCGCCGCGCacucggaGAUGGccACCUCggaGCUCUCGg -3'
miRNA:   3'- gGCGGUGCG-------CUACC--UGGGG---UGAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 142565 0.66 0.838312
Target:  5'- cCCGCCAggcucgccgugccCGCcGUGGccgcCCCCGcCUCCCc -3'
miRNA:   3'- -GGCGGU-------------GCGcUACCu---GGGGU-GAGGGu -5'
14009 5' -60.7 NC_003521.1 + 181862 0.66 0.845867
Target:  5'- uUCGCCACGCac--GACCCCucggcgaGCUCgCCGa -3'
miRNA:   3'- -GGCGGUGCGcuacCUGGGG-------UGAG-GGU- -5'
14009 5' -60.7 NC_003521.1 + 213349 0.66 0.853983
Target:  5'- aCCGCCACaUGAcGGACCUgGCcagCCUg -3'
miRNA:   3'- -GGCGGUGcGCUaCCUGGGgUGa--GGGu -5'
14009 5' -60.7 NC_003521.1 + 225266 0.66 0.831373
Target:  5'- gUGUCGCGUGAaggUGGGCgCCCccucUUCCCAg -3'
miRNA:   3'- gGCGGUGCGCU---ACCUG-GGGu---GAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 234341 0.66 0.831373
Target:  5'- aCCGCCucCGCuGccGGACCUgcCUCCCGu -3'
miRNA:   3'- -GGCGGu-GCG-CuaCCUGGGguGAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 124222 0.66 0.831373
Target:  5'- -gGCC-CGCGAccGGGCCCgAUUCCgAa -3'
miRNA:   3'- ggCGGuGCGCUa-CCUGGGgUGAGGgU- -5'
14009 5' -60.7 NC_003521.1 + 119241 0.66 0.815504
Target:  5'- aCGCCGCGCuugaacaggugGAUGGugCCCAguaUCUg- -3'
miRNA:   3'- gGCGGUGCG-----------CUACCugGGGUg--AGGgu -5'
14009 5' -60.7 NC_003521.1 + 132296 0.66 0.823514
Target:  5'- gCCGCCACGUGGaGG-CCaacaaaauCUCCCGc -3'
miRNA:   3'- -GGCGGUGCGCUaCCuGGggu-----GAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 57021 0.66 0.831373
Target:  5'- gCCGCCACGCgGAUGaACa-CGCcgCCCAg -3'
miRNA:   3'- -GGCGGUGCG-CUACcUGggGUGa-GGGU- -5'
14009 5' -60.7 NC_003521.1 + 4686 0.66 0.831373
Target:  5'- aCGUCGCGCGGUcccCCCCG-UCCCGu -3'
miRNA:   3'- gGCGGUGCGCUAccuGGGGUgAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 60689 0.66 0.821924
Target:  5'- gCgGCCGCGCGggGGACCCgggggcggcgcggguCGCaccacgccgcugcccUCCCu -3'
miRNA:   3'- -GgCGGUGCGCuaCCUGGG---------------GUG---------------AGGGu -5'
14009 5' -60.7 NC_003521.1 + 117146 0.66 0.823514
Target:  5'- aCCGCCACGCcgcaGcGCgCCgGCUCCCu -3'
miRNA:   3'- -GGCGGUGCGcua-CcUG-GGgUGAGGGu -5'
14009 5' -60.7 NC_003521.1 + 26306 0.66 0.831373
Target:  5'- -gGCCACGCGcUGu-CCgCGCUUCCAg -3'
miRNA:   3'- ggCGGUGCGCuACcuGGgGUGAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.