miRNA display CGI


Results 1 - 20 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 5' -60.7 NC_003521.1 + 1683 0.66 0.846613
Target:  5'- gCCGCCACGacacaGAggcggGGACgCCGCaggaaaaCCCGa -3'
miRNA:   3'- -GGCGGUGCg----CUa----CCUGgGGUGa------GGGU- -5'
14009 5' -60.7 NC_003521.1 + 4605 0.72 0.51249
Target:  5'- -gGCCGCGCGggGGAacaugaccucaCCCGCUCCg- -3'
miRNA:   3'- ggCGGUGCGCuaCCUg----------GGGUGAGGgu -5'
14009 5' -60.7 NC_003521.1 + 4686 0.66 0.831373
Target:  5'- aCGUCGCGCGGUcccCCCCG-UCCCGu -3'
miRNA:   3'- gGCGGUGCGCUAccuGGGGUgAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 5209 0.67 0.773421
Target:  5'- aCaCCACGCGGUcGGGCUCCGC-CCgAg -3'
miRNA:   3'- gGcGGUGCGCUA-CCUGGGGUGaGGgU- -5'
14009 5' -60.7 NC_003521.1 + 8442 0.69 0.663025
Target:  5'- -aGCCAgCGCGAgacggUGGACCuCCGCUUCgCGg -3'
miRNA:   3'- ggCGGU-GCGCU-----ACCUGG-GGUGAGG-GU- -5'
14009 5' -60.7 NC_003521.1 + 12752 0.67 0.782086
Target:  5'- gCGCCucggACGUGAgcugGGACCCgCGCgugcgCCCc -3'
miRNA:   3'- gGCGG----UGCGCUa---CCUGGG-GUGa----GGGu -5'
14009 5' -60.7 NC_003521.1 + 12951 0.67 0.773421
Target:  5'- gCGCauccCGCGucgGGACCUCAUaaUCCCAg -3'
miRNA:   3'- gGCGgu--GCGCua-CCUGGGGUG--AGGGU- -5'
14009 5' -60.7 NC_003521.1 + 14447 0.66 0.815504
Target:  5'- aCgGCCcUGCGgcGGcgucaGCCgCCGCUCCCGc -3'
miRNA:   3'- -GgCGGuGCGCuaCC-----UGG-GGUGAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 17364 0.67 0.796543
Target:  5'- aCGCCgGCGCGgcGGcCCagacucgagagggaCCGCUCCCu -3'
miRNA:   3'- gGCGG-UGCGCuaCCuGG--------------GGUGAGGGu -5'
14009 5' -60.7 NC_003521.1 + 17418 0.7 0.615384
Target:  5'- aCGCCGCGCcg-GGGCgCCACacggCCCGc -3'
miRNA:   3'- gGCGGUGCGcuaCCUGgGGUGa---GGGU- -5'
14009 5' -60.7 NC_003521.1 + 18927 0.73 0.425573
Target:  5'- gCGCCGCGCGccGGcaauccGCCCCACacgCCCu -3'
miRNA:   3'- gGCGGUGCGCuaCC------UGGGGUGa--GGGu -5'
14009 5' -60.7 NC_003521.1 + 18992 0.71 0.55863
Target:  5'- gCGCCGCGCGAcgagGGagacacgcccGCCCCGCcgacggagCCCAu -3'
miRNA:   3'- gGCGGUGCGCUa---CC----------UGGGGUGa-------GGGU- -5'
14009 5' -60.7 NC_003521.1 + 19846 0.68 0.728604
Target:  5'- uUCGCC-CGCGAcgUGGAgCUgcagCGCUCCCu -3'
miRNA:   3'- -GGCGGuGCGCU--ACCUgGG----GUGAGGGu -5'
14009 5' -60.7 NC_003521.1 + 22750 0.66 0.826676
Target:  5'- gCCGCCGCcucgcugugcuucgaGaCGGUGGACCUCAuCUaCCUg -3'
miRNA:   3'- -GGCGGUG---------------C-GCUACCUGGGGU-GA-GGGu -5'
14009 5' -60.7 NC_003521.1 + 25534 0.66 0.831373
Target:  5'- gCCGCCGCugGCGGUGGccuGCCUCugcaUCUCGc -3'
miRNA:   3'- -GGCGGUG--CGCUACC---UGGGGug--AGGGU- -5'
14009 5' -60.7 NC_003521.1 + 26306 0.66 0.831373
Target:  5'- -gGCCACGCGcUGu-CCgCGCUUCCAg -3'
miRNA:   3'- ggCGGUGCGCuACcuGGgGUGAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 27205 0.69 0.672515
Target:  5'- cCUGCUGCGCGGc-GACCgCCAC-CCCAa -3'
miRNA:   3'- -GGCGGUGCGCUacCUGG-GGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 27767 0.7 0.605864
Target:  5'- uCCGCCgaGCGCGGaGGAagaaaCCUACUCCg- -3'
miRNA:   3'- -GGCGG--UGCGCUaCCUg----GGGUGAGGgu -5'
14009 5' -60.7 NC_003521.1 + 29345 0.67 0.80735
Target:  5'- gCUGCCACGCGcacUGGACggagugcgaaCCCGCggCCGc -3'
miRNA:   3'- -GGCGGUGCGCu--ACCUG----------GGGUGagGGU- -5'
14009 5' -60.7 NC_003521.1 + 33153 0.68 0.736832
Target:  5'- gCCGUCAucucccuCGCGAU--GCCCC-CUCCCGa -3'
miRNA:   3'- -GGCGGU-------GCGCUAccUGGGGuGAGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.