miRNA display CGI


Results 1 - 20 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 5' -60.7 NC_003521.1 + 105047 0.69 0.691402
Target:  5'- cCCGCCcguGCGCGAgcaGCCCCAggggcgaUCCCAc -3'
miRNA:   3'- -GGCGG---UGCGCUaccUGGGGUg------AGGGU- -5'
14009 5' -60.7 NC_003521.1 + 108420 0.69 0.653513
Target:  5'- uUGCCAuUGCag-GGACCCCGC-CCCGu -3'
miRNA:   3'- gGCGGU-GCGcuaCCUGGGGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 238952 0.69 0.663025
Target:  5'- gCGCCAgcUGCGGUauuagaggcgccGGGCCCCG-UCCCGg -3'
miRNA:   3'- gGCGGU--GCGCUA------------CCUGGGGUgAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 44354 0.69 0.672515
Target:  5'- uCCGCgACGCGcugGGGCugcggCCCACgCCCGa -3'
miRNA:   3'- -GGCGgUGCGCua-CCUG-----GGGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 135517 0.69 0.672515
Target:  5'- aCGUCGCGCGgcGu-CCCCACgCCCGc -3'
miRNA:   3'- gGCGGUGCGCuaCcuGGGGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 232848 0.69 0.672515
Target:  5'- cCCGCCGC-CGc-GGACCCC--UCCCGg -3'
miRNA:   3'- -GGCGGUGcGCuaCCUGGGGugAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 93427 0.69 0.681976
Target:  5'- aCCGCCACGCGAUccGCCaucucgCACcCCCGu -3'
miRNA:   3'- -GGCGGUGCGCUAccUGGg-----GUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 128066 0.69 0.681976
Target:  5'- gCGCCGCGCGAUGccGCCCauggGCUCgCGc -3'
miRNA:   3'- gGCGGUGCGCUACc-UGGGg---UGAGgGU- -5'
14009 5' -60.7 NC_003521.1 + 49573 0.69 0.691402
Target:  5'- cCUGCCGCGUGGgccgcGGcgccGCCUC-CUCCCAa -3'
miRNA:   3'- -GGCGGUGCGCUa----CC----UGGGGuGAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 67566 0.69 0.653513
Target:  5'- gUGUCAgGCGgcGGGCCCCGCgggCCAg -3'
miRNA:   3'- gGCGGUgCGCuaCCUGGGGUGag-GGU- -5'
14009 5' -60.7 NC_003521.1 + 149503 0.7 0.643987
Target:  5'- gCCGCUGCGCGAcuaccugGGACCCgAC-CUCu -3'
miRNA:   3'- -GGCGGUGCGCUa------CCUGGGgUGaGGGu -5'
14009 5' -60.7 NC_003521.1 + 114333 0.7 0.60967
Target:  5'- gCCGCCugGCGcucuucgucgaagacGUGGGuCUCUACUCCa- -3'
miRNA:   3'- -GGCGGugCGC---------------UACCU-GGGGUGAGGgu -5'
14009 5' -60.7 NC_003521.1 + 162356 0.73 0.425573
Target:  5'- aCGUCGCGCGccGGGCCgCGUUCCCAg -3'
miRNA:   3'- gGCGGUGCGCuaCCUGGgGUGAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 222272 0.73 0.442272
Target:  5'- gCGCgCGCGUGAUGGugCCCAgagCCCc -3'
miRNA:   3'- gGCG-GUGCGCUACCugGGGUga-GGGu -5'
14009 5' -60.7 NC_003521.1 + 184000 0.73 0.467996
Target:  5'- -gGCCGCGUGGUGGGuuagacguUCCCAC-CCCGa -3'
miRNA:   3'- ggCGGUGCGCUACCU--------GGGGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 117266 0.72 0.485566
Target:  5'- cCCGCCACcgccgucgucgGCcGUGGugCCgGCUCCCc -3'
miRNA:   3'- -GGCGGUG-----------CGcUACCugGGgUGAGGGu -5'
14009 5' -60.7 NC_003521.1 + 4605 0.72 0.51249
Target:  5'- -gGCCGCGCGggGGAacaugaccucaCCCGCUCCg- -3'
miRNA:   3'- ggCGGUGCGCuaCCUg----------GGGUGAGGgu -5'
14009 5' -60.7 NC_003521.1 + 141480 0.71 0.529857
Target:  5'- gCCGCUucuccggGCGCGA-GGugCCCACcuggCCCGc -3'
miRNA:   3'- -GGCGG-------UGCGCUaCCugGGGUGa---GGGU- -5'
14009 5' -60.7 NC_003521.1 + 91929 0.71 0.549295
Target:  5'- gCgGCgAUGCGGUGGACCCgGCggcggacCCCGu -3'
miRNA:   3'- -GgCGgUGCGCUACCUGGGgUGa------GGGU- -5'
14009 5' -60.7 NC_003521.1 + 227324 0.71 0.58688
Target:  5'- aCCGCUACcCGAaaGACCCCACguucCCCGu -3'
miRNA:   3'- -GGCGGUGcGCUacCUGGGGUGa---GGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.