miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 5' -60.7 NC_003521.1 + 188401 1.1 0.001847
Target:  5'- aCCGCCACGCGAUGGACCCCACUCCCAu -3'
miRNA:   3'- -GGCGGUGCGCUACCUGGGGUGAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 87730 0.76 0.326844
Target:  5'- gCGCCcggcgGCGUGGUGGGCCCCGg-CCCGg -3'
miRNA:   3'- gGCGG-----UGCGCUACCUGGGGUgaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 180229 0.74 0.393334
Target:  5'- gUGCCGCGCGuGUGGGCCUCgaacuGCUCCUc -3'
miRNA:   3'- gGCGGUGCGC-UACCUGGGG-----UGAGGGu -5'
14009 5' -60.7 NC_003521.1 + 66338 0.74 0.393334
Target:  5'- gCCGCCugGCagcaacUGGAUCCCGCUCgCGu -3'
miRNA:   3'- -GGCGGugCGcu----ACCUGGGGUGAGgGU- -5'
14009 5' -60.7 NC_003521.1 + 97668 0.74 0.401245
Target:  5'- aCCcCCACGgGAUcgucgaGGACgCCCACUCCCu -3'
miRNA:   3'- -GGcGGUGCgCUA------CCUG-GGGUGAGGGu -5'
14009 5' -60.7 NC_003521.1 + 18927 0.73 0.425573
Target:  5'- gCGCCGCGCGccGGcaauccGCCCCACacgCCCu -3'
miRNA:   3'- gGCGGUGCGCuaCC------UGGGGUGa--GGGu -5'
14009 5' -60.7 NC_003521.1 + 162356 0.73 0.425573
Target:  5'- aCGUCGCGCGccGGGCCgCGUUCCCAg -3'
miRNA:   3'- gGCGGUGCGCuaCCUGGgGUGAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 222272 0.73 0.442272
Target:  5'- gCGCgCGCGUGAUGGugCCCAgagCCCc -3'
miRNA:   3'- gGCG-GUGCGCUACCugGGGUga-GGGu -5'
14009 5' -60.7 NC_003521.1 + 184000 0.73 0.467996
Target:  5'- -gGCCGCGUGGUGGGuuagacguUCCCAC-CCCGa -3'
miRNA:   3'- ggCGGUGCGCUACCU--------GGGGUGaGGGU- -5'
14009 5' -60.7 NC_003521.1 + 174472 0.72 0.476741
Target:  5'- gCCgGCCACGCGAgcgGGAUCCaguuGCUgCCAg -3'
miRNA:   3'- -GG-CGGUGCGCUa--CCUGGGg---UGAgGGU- -5'
14009 5' -60.7 NC_003521.1 + 117266 0.72 0.485566
Target:  5'- cCCGCCACcgccgucgucgGCcGUGGugCCgGCUCCCc -3'
miRNA:   3'- -GGCGGUG-----------CGcUACCugGGgUGAGGGu -5'
14009 5' -60.7 NC_003521.1 + 195287 0.72 0.503444
Target:  5'- gCCGCCGC-UGAcgGGGCgCCCGCUCCa- -3'
miRNA:   3'- -GGCGGUGcGCUa-CCUG-GGGUGAGGgu -5'
14009 5' -60.7 NC_003521.1 + 4605 0.72 0.51249
Target:  5'- -gGCCGCGCGggGGAacaugaccucaCCCGCUCCg- -3'
miRNA:   3'- ggCGGUGCGCuaCCUg----------GGGUGAGGgu -5'
14009 5' -60.7 NC_003521.1 + 107317 0.72 0.521602
Target:  5'- aUCGCCGCGgGuUGGGCCCCGCagCa- -3'
miRNA:   3'- -GGCGGUGCgCuACCUGGGGUGagGgu -5'
14009 5' -60.7 NC_003521.1 + 141480 0.71 0.529857
Target:  5'- gCCGCUucuccggGCGCGA-GGugCCCACcuggCCCGc -3'
miRNA:   3'- -GGCGG-------UGCGCUaCCugGGGUGa---GGGU- -5'
14009 5' -60.7 NC_003521.1 + 91929 0.71 0.549295
Target:  5'- gCgGCgAUGCGGUGGACCCgGCggcggacCCCGu -3'
miRNA:   3'- -GgCGgUGCGCUACCUGGGgUGa------GGGU- -5'
14009 5' -60.7 NC_003521.1 + 18992 0.71 0.55863
Target:  5'- gCGCCGCGCGAcgagGGagacacgcccGCCCCGCcgacggagCCCAu -3'
miRNA:   3'- gGCGGUGCGCUa---CC----------UGGGGUGa-------GGGU- -5'
14009 5' -60.7 NC_003521.1 + 90272 0.71 0.559566
Target:  5'- gCCGCCACcacccgcaccaccacCGccGGACCCCacgGCUCCCGc -3'
miRNA:   3'- -GGCGGUGc--------------GCuaCCUGGGG---UGAGGGU- -5'
14009 5' -60.7 NC_003521.1 + 128472 0.71 0.567069
Target:  5'- gCCGCCGCGUGcguacgguGUGGcaaucACCCCGCcgucgggUCCCGu -3'
miRNA:   3'- -GGCGGUGCGC--------UACC-----UGGGGUG-------AGGGU- -5'
14009 5' -60.7 NC_003521.1 + 227324 0.71 0.58688
Target:  5'- aCCGCUACcCGAaaGACCCCACguucCCCGu -3'
miRNA:   3'- -GGCGGUGcGCUacCUGGGGUGa---GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.