Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1401 | 3' | -55.9 | NC_001335.1 | + | 438 | 0.69 | 0.480225 |
Target: 5'- cCGCGCACUGGCgcggccuugagauccGGCGGUUGCCGAu -3' miRNA: 3'- uGCGUGUGGCUGaa-------------CUGUCGGUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 658 | 0.66 | 0.677626 |
Target: 5'- aGCGCGcCGCCGuuCUUGGCGGCguaAUCGc -3' miRNA: 3'- -UGCGU-GUGGCu-GAACUGUCGg--UGGCu -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 1333 | 0.66 | 0.677626 |
Target: 5'- cCGC-CGCCGGCUccacuuccGCcGCCACCGGu -3' miRNA: 3'- uGCGuGUGGCUGAac------UGuCGGUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 4077 | 0.68 | 0.535565 |
Target: 5'- cAUGCcgACCGGCgaGGCAGCCGgCGGc -3' miRNA: 3'- -UGCGugUGGCUGaaCUGUCGGUgGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 4923 | 0.76 | 0.19586 |
Target: 5'- -aGCAuCACCGGCUUGAUcggcaaGGCCGCUGGc -3' miRNA: 3'- ugCGU-GUGGCUGAACUG------UCGGUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 5601 | 0.66 | 0.666676 |
Target: 5'- -gGUGCGCCGGCcguagcGGCAGgCACCGu -3' miRNA: 3'- ugCGUGUGGCUGaa----CUGUCgGUGGCu -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 5628 | 0.68 | 0.523877 |
Target: 5'- cCGCAaugauguCACCGAg--GuCAGCCGCCGAc -3' miRNA: 3'- uGCGU-------GUGGCUgaaCuGUCGGUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 5919 | 0.67 | 0.622654 |
Target: 5'- cCGCACGggaCGuACUUGACAuCUACCGGu -3' miRNA: 3'- uGCGUGUg--GC-UGAACUGUcGGUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 6069 | 0.71 | 0.369294 |
Target: 5'- cGCGCugGCCGGCUacucgcaGGgAGCCAUCGu -3' miRNA: 3'- -UGCGugUGGCUGAa------CUgUCGGUGGCu -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 7396 | 0.71 | 0.378071 |
Target: 5'- aACGCccacauccccgGCACCGA---GACGGUCGCCGAg -3' miRNA: 3'- -UGCG-----------UGUGGCUgaaCUGUCGGUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 8513 | 0.66 | 0.633671 |
Target: 5'- gACGCugaGCGCCGGCcaGA-GGCCAUCGGc -3' miRNA: 3'- -UGCG---UGUGGCUGaaCUgUCGGUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 9178 | 0.67 | 0.622654 |
Target: 5'- gAUGCGCGCCGcCgcGuCGGUCAUCGAc -3' miRNA: 3'- -UGCGUGUGGCuGaaCuGUCGGUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 12210 | 0.66 | 0.655692 |
Target: 5'- cCGuCACGUCGAag-GACAgGCCGCCGAc -3' miRNA: 3'- uGC-GUGUGGCUgaaCUGU-CGGUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 12302 | 0.74 | 0.254145 |
Target: 5'- gACGC-CACCGaagccugauccagGCUUGACAuCCACCGGg -3' miRNA: 3'- -UGCGuGUGGC-------------UGAACUGUcGGUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 13613 | 0.7 | 0.405231 |
Target: 5'- cCGCAuCACCGACgagGGCuacuucccGGCCACCa- -3' miRNA: 3'- uGCGU-GUGGCUGaa-CUG--------UCGGUGGcu -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 14377 | 0.66 | 0.633671 |
Target: 5'- cUGCGCACCGACguacacgUAGCCgACCGc -3' miRNA: 3'- uGCGUGUGGCUGaacu---GUCGG-UGGCu -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 14854 | 0.7 | 0.405231 |
Target: 5'- -gGCugAUCccaACUUGACAGCCACCc- -3' miRNA: 3'- ugCGugUGGc--UGAACUGUCGGUGGcu -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 16275 | 0.66 | 0.633671 |
Target: 5'- cGCGCucgGCAUgGACggcaucaaGGCAGCCGCCu- -3' miRNA: 3'- -UGCG---UGUGgCUGaa------CUGUCGGUGGcu -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 16960 | 0.69 | 0.493555 |
Target: 5'- -aGCACGCCGGCacGAU-GCuCACCGGa -3' miRNA: 3'- ugCGUGUGGCUGaaCUGuCG-GUGGCU- -5' |
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1401 | 3' | -55.9 | NC_001335.1 | + | 17136 | 0.66 | 0.655692 |
Target: 5'- cCGCACAucCCGGCgcuggcGACGGCCcUCGGc -3' miRNA: 3'- uGCGUGU--GGCUGaa----CUGUCGGuGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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