miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1401 3' -55.9 NC_001335.1 + 12302 0.74 0.254145
Target:  5'- gACGC-CACCGaagccugauccagGCUUGACAuCCACCGGg -3'
miRNA:   3'- -UGCGuGUGGC-------------UGAACUGUcGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 51846 0.66 0.655692
Target:  5'- uCGCuggucucggugGCAUCG-CUUGACAGUCGCCc- -3'
miRNA:   3'- uGCG-----------UGUGGCuGAACUGUCGGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 28931 0.66 0.666676
Target:  5'- cCGCGaGCUGuCaccGGCAGCCGCCGGc -3'
miRNA:   3'- uGCGUgUGGCuGaa-CUGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 45288 0.66 0.688533
Target:  5'- gACGUACAgCG---UGACAGggaCCACCGAc -3'
miRNA:   3'- -UGCGUGUgGCugaACUGUC---GGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 7396 0.71 0.378071
Target:  5'- aACGCccacauccccgGCACCGA---GACGGUCGCCGAg -3'
miRNA:   3'- -UGCG-----------UGUGGCUgaaCUGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 14854 0.7 0.405231
Target:  5'- -gGCugAUCccaACUUGACAGCCACCc- -3'
miRNA:   3'- ugCGugUGGc--UGAACUGUCGGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 46285 0.7 0.424006
Target:  5'- cGCGCugACCGug--GGCauAGCCGCUGAg -3'
miRNA:   3'- -UGCGugUGGCugaaCUG--UCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 48271 0.7 0.443292
Target:  5'- gGCGCucGCGCCGuacCUUGucGCGGCCgGCCGGc -3'
miRNA:   3'- -UGCG--UGUGGCu--GAAC--UGUCGG-UGGCU- -5'
1401 3' -55.9 NC_001335.1 + 38792 0.68 0.535565
Target:  5'- gAUGCGCuccCCGAUgacuugGACGGCCGgCGGg -3'
miRNA:   3'- -UGCGUGu--GGCUGaa----CUGUCGGUgGCU- -5'
1401 3' -55.9 NC_001335.1 + 32624 0.66 0.655692
Target:  5'- cCGUugGCCGGCgcgGAU--CCACCGGa -3'
miRNA:   3'- uGCGugUGGCUGaa-CUGucGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 8513 0.66 0.633671
Target:  5'- gACGCugaGCGCCGGCcaGA-GGCCAUCGGc -3'
miRNA:   3'- -UGCG---UGUGGCUGaaCUgUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 4077 0.68 0.535565
Target:  5'- cAUGCcgACCGGCgaGGCAGCCGgCGGc -3'
miRNA:   3'- -UGCGugUGGCUGaaCUGUCGGUgGCU- -5'
1401 3' -55.9 NC_001335.1 + 18263 0.73 0.285044
Target:  5'- aACGCGCuguccgucguuggccGCUGACUUGACAuCCACCa- -3'
miRNA:   3'- -UGCGUG---------------UGGCUGAACUGUcGGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 16275 0.66 0.633671
Target:  5'- cGCGCucgGCAUgGACggcaucaaGGCAGCCGCCu- -3'
miRNA:   3'- -UGCG---UGUGgCUGaa------CUGUCGGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 22755 0.72 0.311842
Target:  5'- cCGCACcaACCccgcaGACgagaaGACAGCCACCGAc -3'
miRNA:   3'- uGCGUG--UGG-----CUGaa---CUGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 16960 0.69 0.493555
Target:  5'- -aGCACGCCGGCacGAU-GCuCACCGGa -3'
miRNA:   3'- ugCGUGUGGCUGaaCUGuCG-GUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 17136 0.66 0.655692
Target:  5'- cCGCACAucCCGGCgcuggcGACGGCCcUCGGc -3'
miRNA:   3'- uGCGUGU--GGCUGaa----CUGUCGGuGGCU- -5'
1401 3' -55.9 NC_001335.1 + 5601 0.66 0.666676
Target:  5'- -gGUGCGCCGGCcguagcGGCAGgCACCGu -3'
miRNA:   3'- ugCGUGUGGCUGaa----CUGUCgGUGGCu -5'
1401 3' -55.9 NC_001335.1 + 6069 0.71 0.369294
Target:  5'- cGCGCugGCCGGCUacucgcaGGgAGCCAUCGu -3'
miRNA:   3'- -UGCGugUGGCUGAa------CUgUCGGUGGCu -5'
1401 3' -55.9 NC_001335.1 + 13613 0.7 0.405231
Target:  5'- cCGCAuCACCGACgagGGCuacuucccGGCCACCa- -3'
miRNA:   3'- uGCGU-GUGGCUGaa-CUG--------UCGGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.