miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 117718 0.67 0.950653
Target:  5'- cGGCcCgGCGAGGACGGucuGGAGGugcgCGu -3'
miRNA:   3'- -CCGcG-CGCUCCUGCU---CCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 60121 0.67 0.950653
Target:  5'- uGGUGaCGCGAcugcuGaGCGAGGAGGug-UCGa -3'
miRNA:   3'- -CCGC-GCGCU-----CcUGCUCCUCCuaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 25570 0.67 0.950653
Target:  5'- aGGCGgcCGCGGGGAC-AGGuGGGcuugUUCa -3'
miRNA:   3'- -CCGC--GCGCUCCUGcUCCuCCUa---AAGc -5'
14016 3' -55.8 NC_003521.1 + 38738 0.67 0.946587
Target:  5'- aGCGCGUGcuGcCGAuGGAGGAUuuaUUCGg -3'
miRNA:   3'- cCGCGCGCucCuGCU-CCUCCUA---AAGC- -5'
14016 3' -55.8 NC_003521.1 + 177911 0.67 0.946587
Target:  5'- gGGCgaGCGgGAGGGCGucgucGGGAGGGa---- -3'
miRNA:   3'- -CCG--CGCgCUCCUGC-----UCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 67062 0.67 0.942306
Target:  5'- -uCGgGCGAGGAgguaGAGGAGGAg--Ca -3'
miRNA:   3'- ccGCgCGCUCCUg---CUCCUCCUaaaGc -5'
14016 3' -55.8 NC_003521.1 + 86944 0.67 0.942306
Target:  5'- cGCGCGCu-GGACGAcGAGGAUcUgGa -3'
miRNA:   3'- cCGCGCGcuCCUGCUcCUCCUAaAgC- -5'
14016 3' -55.8 NC_003521.1 + 100437 0.67 0.942306
Target:  5'- aGGCGa-CGGGGGCGGaGAGGAg-UCGg -3'
miRNA:   3'- -CCGCgcGCUCCUGCUcCUCCUaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 178279 0.67 0.942306
Target:  5'- cGCGCGCGA--ACGAGcGGGAcgggUUCGg -3'
miRNA:   3'- cCGCGCGCUccUGCUCcUCCUa---AAGC- -5'
14016 3' -55.8 NC_003521.1 + 129877 0.67 0.942306
Target:  5'- gGGUGaCGgcCGGGGAgGAGGAGGAc---- -3'
miRNA:   3'- -CCGC-GC--GCUCCUgCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 40915 0.68 0.937809
Target:  5'- aGCGagGCGGGGGCGGcccGGGGGAg--CGc -3'
miRNA:   3'- cCGCg-CGCUCCUGCU---CCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 135265 0.68 0.933093
Target:  5'- cGGCGgaCGcCGAcGACGAGGAGGAc---- -3'
miRNA:   3'- -CCGC--GC-GCUcCUGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 148385 0.68 0.933093
Target:  5'- cGGgGUGCGGGGAgGcuGGGGGGUg--- -3'
miRNA:   3'- -CCgCGCGCUCCUgCu-CCUCCUAaagc -5'
14016 3' -55.8 NC_003521.1 + 91323 0.68 0.933093
Target:  5'- uGCGCGCGGGGgcacgcgcagGCGAGGugcuggucGGGAggaCGg -3'
miRNA:   3'- cCGCGCGCUCC----------UGCUCC--------UCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 33693 0.68 0.928158
Target:  5'- aGGCuCGgGAGGGagaaGAGGAGGAa---- -3'
miRNA:   3'- -CCGcGCgCUCCUg---CUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 146157 0.68 0.928158
Target:  5'- --aGCGCGAGGagaGCGAGGuGGGccgCGa -3'
miRNA:   3'- ccgCGCGCUCC---UGCUCCuCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 185214 0.68 0.928158
Target:  5'- gGGcCGCGCGGGacugcguguacGACGAGGAGacGGUguggUCGc -3'
miRNA:   3'- -CC-GCGCGCUC-----------CUGCUCCUC--CUAa---AGC- -5'
14016 3' -55.8 NC_003521.1 + 26053 0.68 0.928158
Target:  5'- cGGCgaGCGgGAGGGgggaGAGGAGGAa---- -3'
miRNA:   3'- -CCG--CGCgCUCCUg---CUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 123372 0.68 0.923003
Target:  5'- aGGCG-GCGGGGgcuggugagaauACGGGGAGGGa---- -3'
miRNA:   3'- -CCGCgCGCUCC------------UGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 50000 0.68 0.917628
Target:  5'- gGGuCGUccaGCGAGGACaAGGAGGAa---- -3'
miRNA:   3'- -CC-GCG---CGCUCCUGcUCCUCCUaaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.