miRNA display CGI


Results 21 - 40 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 125731 0.66 0.964831
Target:  5'- gGGCG-GCGAcGGCGcAGGgcAGGGUUUCu -3'
miRNA:   3'- -CCGCgCGCUcCUGC-UCC--UCCUAAAGc -5'
14016 3' -55.8 NC_003521.1 + 86891 0.66 0.964831
Target:  5'- cGGCGCgGCGGGuGGcCGAGGAGuGGa---- -3'
miRNA:   3'- -CCGCG-CGCUC-CU-GCUCCUC-CUaaagc -5'
14016 3' -55.8 NC_003521.1 + 184422 0.66 0.96388
Target:  5'- cGGCGCuGCGAGGAguccugccccaaggUGAcGGucaacaccgAGGAUUUCu -3'
miRNA:   3'- -CCGCG-CGCUCCU--------------GCU-CC---------UCCUAAAGc -5'
14016 3' -55.8 NC_003521.1 + 193306 0.67 0.961592
Target:  5'- cGGCGCG-GGGGugGuGGgcacggugGGGGUggUCGc -3'
miRNA:   3'- -CCGCGCgCUCCugCuCC--------UCCUAa-AGC- -5'
14016 3' -55.8 NC_003521.1 + 196886 0.67 0.961592
Target:  5'- cGCGgGUGAGGcCGGGGcGGAaggCGg -3'
miRNA:   3'- cCGCgCGCUCCuGCUCCuCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 181664 0.67 0.961592
Target:  5'- uGGUGCGCGGGGGaGAucGGAGaGAga-CGg -3'
miRNA:   3'- -CCGCGCGCUCCUgCU--CCUC-CUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 105481 0.67 0.961592
Target:  5'- cGGCGCGCGcGGGA--GGGAGGc----- -3'
miRNA:   3'- -CCGCGCGC-UCCUgcUCCUCCuaaagc -5'
14016 3' -55.8 NC_003521.1 + 162242 0.67 0.961257
Target:  5'- cGGCGCugGCGGGGugGGcgucaacGGGGGug--CGa -3'
miRNA:   3'- -CCGCG--CGCUCCugCU-------CCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 177996 0.67 0.958152
Target:  5'- cGGUGCGgGuAGGGCGgguAGGAcGGAgg-CGg -3'
miRNA:   3'- -CCGCGCgC-UCCUGC---UCCU-CCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 206386 0.67 0.958152
Target:  5'- aGGCGUGUcGGGACuuuccaGAcGGGGAUUUCa -3'
miRNA:   3'- -CCGCGCGcUCCUG------CUcCUCCUAAAGc -5'
14016 3' -55.8 NC_003521.1 + 98603 0.67 0.958152
Target:  5'- cGCaGCGaCGAGGccaugGCGAGGAGGGcgagagCGg -3'
miRNA:   3'- cCG-CGC-GCUCC-----UGCUCCUCCUaaa---GC- -5'
14016 3' -55.8 NC_003521.1 + 13990 0.67 0.958152
Target:  5'- cGGCGCgGCGGcGGGCGAGGAc------- -3'
miRNA:   3'- -CCGCG-CGCU-CCUGCUCCUccuaaagc -5'
14016 3' -55.8 NC_003521.1 + 169606 0.67 0.957797
Target:  5'- aGUGcCGCGguuguagGGGACGAGGcGGAUgcgaaUUCGa -3'
miRNA:   3'- cCGC-GCGC-------UCCUGCUCCuCCUA-----AAGC- -5'
14016 3' -55.8 NC_003521.1 + 69257 0.67 0.956719
Target:  5'- gGGUGCccguuuucuccccUGAGGAUGAGGAGGAa---- -3'
miRNA:   3'- -CCGCGc------------GCUCCUGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 86707 0.67 0.954507
Target:  5'- cGGCG-GCGAcGACGAGGcGGugaUCGa -3'
miRNA:   3'- -CCGCgCGCUcCUGCUCCuCCuaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 75882 0.67 0.954507
Target:  5'- cGGCGaCGCGAGccgccgGAGGAGGGgccCGg -3'
miRNA:   3'- -CCGC-GCGCUCcug---CUCCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 123691 0.67 0.954507
Target:  5'- cGGCGUgGCGGuGGAaGAGGAGGcgg-CGg -3'
miRNA:   3'- -CCGCG-CGCU-CCUgCUCCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 46343 0.67 0.954507
Target:  5'- gGGCGCGuCGucGGACGAGGGcGAa---- -3'
miRNA:   3'- -CCGCGC-GCu-CCUGCUCCUcCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 161727 0.67 0.954507
Target:  5'- cGGuUGCGCGAGGucaucgccaGCGuGGGGGAg---- -3'
miRNA:   3'- -CC-GCGCGCUCC---------UGCuCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 25570 0.67 0.950653
Target:  5'- aGGCGgcCGCGGGGAC-AGGuGGGcuugUUCa -3'
miRNA:   3'- -CCGC--GCGCUCCUGcUCCuCCUa---AAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.