miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 44938 0.66 0.970724
Target:  5'- -aCGaCGaaGAGGACGGGGAGGAagggCGg -3'
miRNA:   3'- ccGC-GCg-CUCCUGCUCCUCCUaaa-GC- -5'
14016 3' -55.8 NC_003521.1 + 184422 0.66 0.96388
Target:  5'- cGGCGCuGCGAGGAguccugccccaaggUGAcGGucaacaccgAGGAUUUCu -3'
miRNA:   3'- -CCGCG-CGCUCCU--------------GCU-CC---------UCCUAAAGc -5'
14016 3' -55.8 NC_003521.1 + 11858 0.66 0.970724
Target:  5'- -cCGCGCaccuccucGGACGAGGAGGAc---- -3'
miRNA:   3'- ccGCGCGcu------CCUGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 60121 0.67 0.950653
Target:  5'- uGGUGaCGCGAcugcuGaGCGAGGAGGug-UCGa -3'
miRNA:   3'- -CCGC-GCGCU-----CcUGCUCCUCCuaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 177996 0.67 0.958152
Target:  5'- cGGUGCGgGuAGGGCGgguAGGAcGGAgg-CGg -3'
miRNA:   3'- -CCGCGCgC-UCCUGC---UCCU-CCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 162242 0.67 0.961257
Target:  5'- cGGCGCugGCGGGGugGGcgucaacGGGGGug--CGa -3'
miRNA:   3'- -CCGCG--CGCUCCugCU-------CCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 86707 0.67 0.954507
Target:  5'- cGGCG-GCGAcGACGAGGcGGugaUCGa -3'
miRNA:   3'- -CCGCgCGCUcCUGCUCCuCCuaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 25570 0.67 0.950653
Target:  5'- aGGCGgcCGCGGGGAC-AGGuGGGcuugUUCa -3'
miRNA:   3'- -CCGC--GCGCUCCUGcUCCuCCUa---AAGc -5'
14016 3' -55.8 NC_003521.1 + 38738 0.67 0.946587
Target:  5'- aGCGCGUGcuGcCGAuGGAGGAUuuaUUCGg -3'
miRNA:   3'- cCGCGCGCucCuGCU-CCUCCUA---AAGC- -5'
14016 3' -55.8 NC_003521.1 + 105481 0.67 0.961592
Target:  5'- cGGCGCGCGcGGGA--GGGAGGc----- -3'
miRNA:   3'- -CCGCGCGC-UCCUgcUCCUCCuaaagc -5'
14016 3' -55.8 NC_003521.1 + 46343 0.67 0.954507
Target:  5'- gGGCGCGuCGucGGACGAGGGcGAa---- -3'
miRNA:   3'- -CCGCGC-GCu-CCUGCUCCUcCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 123691 0.67 0.954507
Target:  5'- cGGCGUgGCGGuGGAaGAGGAGGcgg-CGg -3'
miRNA:   3'- -CCGCG-CGCU-CCUgCUCCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 117718 0.67 0.950653
Target:  5'- cGGCcCgGCGAGGACGGucuGGAGGugcgCGu -3'
miRNA:   3'- -CCGcG-CGCUCCUGCU---CCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 75882 0.67 0.954507
Target:  5'- cGGCGaCGCGAGccgccgGAGGAGGGgccCGg -3'
miRNA:   3'- -CCGC-GCGCUCcug---CUCCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 161727 0.67 0.954507
Target:  5'- cGGuUGCGCGAGGucaucgccaGCGuGGGGGAg---- -3'
miRNA:   3'- -CC-GCGCGCUCC---------UGCuCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 169606 0.67 0.957797
Target:  5'- aGUGcCGCGguuguagGGGACGAGGcGGAUgcgaaUUCGa -3'
miRNA:   3'- cCGC-GCGC-------UCCUGCUCCuCCUA-----AAGC- -5'
14016 3' -55.8 NC_003521.1 + 13990 0.67 0.958152
Target:  5'- cGGCGCgGCGGcGGGCGAGGAc------- -3'
miRNA:   3'- -CCGCG-CGCU-CCUGCUCCUccuaaagc -5'
14016 3' -55.8 NC_003521.1 + 98603 0.67 0.958152
Target:  5'- cGCaGCGaCGAGGccaugGCGAGGAGGGcgagagCGg -3'
miRNA:   3'- cCG-CGC-GCUCC-----UGCUCCUCCUaaa---GC- -5'
14016 3' -55.8 NC_003521.1 + 129877 0.67 0.942306
Target:  5'- gGGUGaCGgcCGGGGAgGAGGAGGAc---- -3'
miRNA:   3'- -CCGC-GC--GCUCCUgCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 178279 0.67 0.942306
Target:  5'- cGCGCGCGA--ACGAGcGGGAcgggUUCGg -3'
miRNA:   3'- cCGCGCGCUccUGCUCcUCCUa---AAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.