miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 5410 0.71 0.803953
Target:  5'- gGGCcucGCcCGAGGACGAGGcGGAggaaUCGg -3'
miRNA:   3'- -CCG---CGcGCUCCUGCUCCuCCUaa--AGC- -5'
14016 3' -55.8 NC_003521.1 + 95827 0.71 0.818222
Target:  5'- cGGCGCGCGAGGccuCGGuGGcaugccgcuggcucAGGAUgUCGc -3'
miRNA:   3'- -CCGCGCGCUCCu--GCU-CC--------------UCCUAaAGC- -5'
14016 3' -55.8 NC_003521.1 + 44910 0.71 0.820694
Target:  5'- cGGCGCggcgGCGAGGACGAagacGAGGAc---- -3'
miRNA:   3'- -CCGCG----CGCUCCUGCUc---CUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 239092 0.71 0.820694
Target:  5'- cGGuCGCGgGAGGAacgcgaGGGGAGGGgacCGg -3'
miRNA:   3'- -CC-GCGCgCUCCUg-----CUCCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 101724 0.71 0.820694
Target:  5'- uGCGCgGCGGGGGCGAGauGGGGAa---- -3'
miRNA:   3'- cCGCG-CGCUCCUGCUC--CUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 204702 0.71 0.828833
Target:  5'- aGgGCaGCGAGGugaccaccacgGCGGGGAGGGUggCGa -3'
miRNA:   3'- cCgCG-CGCUCC-----------UGCUCCUCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 31014 0.7 0.841509
Target:  5'- cGGCGCcgGCGAGGACGcguucguggugguGGGGGGUg--- -3'
miRNA:   3'- -CCGCG--CGCUCCUGCu------------CCUCCUAaagc -5'
14016 3' -55.8 NC_003521.1 + 155100 0.7 0.844609
Target:  5'- cGGCGCuGCaggagcAGGGCGuGGAGGAcUUCu -3'
miRNA:   3'- -CCGCG-CGc-----UCCUGCuCCUCCUaAAGc -5'
14016 3' -55.8 NC_003521.1 + 235589 0.7 0.844609
Target:  5'- cGUGCGgGAGGACGAGaGGcGGAc-UCGg -3'
miRNA:   3'- cCGCGCgCUCCUGCUC-CU-CCUaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 163918 0.7 0.849966
Target:  5'- gGGUGCgGCGgcagcggcaacgaaAGaGGCGAGGAGGAgucUCGg -3'
miRNA:   3'- -CCGCG-CGC--------------UC-CUGCUCCUCCUaa-AGC- -5'
14016 3' -55.8 NC_003521.1 + 160448 0.7 0.852235
Target:  5'- aGGCGCGacggcacggcaGAGGAUGAugugGGAGGAgaggCGa -3'
miRNA:   3'- -CCGCGCg----------CUCCUGCU----CCUCCUaaa-GC- -5'
14016 3' -55.8 NC_003521.1 + 156963 0.7 0.86693
Target:  5'- -cUGgGuCGAGGACgGAGGAGGAggagUCGa -3'
miRNA:   3'- ccGCgC-GCUCCUG-CUCCUCCUaa--AGC- -5'
14016 3' -55.8 NC_003521.1 + 142175 0.7 0.87399
Target:  5'- -cUGCGgaagaaGAGGACGAGGAGGAa---- -3'
miRNA:   3'- ccGCGCg-----CUCCUGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 124498 0.7 0.876758
Target:  5'- aGCGCGUGAGGAagccgcccacguagaCGAcGGAGGAa---- -3'
miRNA:   3'- cCGCGCGCUCCU---------------GCU-CCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 148460 0.69 0.880173
Target:  5'- aGCGgGCGAgcGGACGGgcaggacGGAGGGUUcCGg -3'
miRNA:   3'- cCGCgCGCU--CCUGCU-------CCUCCUAAaGC- -5'
14016 3' -55.8 NC_003521.1 + 78280 0.69 0.880173
Target:  5'- aGGCGCGUGAGGAUGuacuucaagucgaAGGAGuuGAUgUUGu -3'
miRNA:   3'- -CCGCGCGCUCCUGC-------------UCCUC--CUAaAGC- -5'
14016 3' -55.8 NC_003521.1 + 156694 0.69 0.88085
Target:  5'- cGCGCuCGGGGAaaaggugcuggcCGGGGAGGAgcgcaugUUCGu -3'
miRNA:   3'- cCGCGcGCUCCU------------GCUCCUCCUa------AAGC- -5'
14016 3' -55.8 NC_003521.1 + 104976 0.69 0.88085
Target:  5'- gGGCGcCGCGA-GACGucGGAGGAgucUUCu -3'
miRNA:   3'- -CCGC-GCGCUcCUGCu-CCUCCUa--AAGc -5'
14016 3' -55.8 NC_003521.1 + 71417 0.69 0.886851
Target:  5'- cGGCG-GCcccgaaccugacaGAGGACGAGGcgGGGAUcgCGg -3'
miRNA:   3'- -CCGCgCG-------------CUCCUGCUCC--UCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 178842 0.69 0.887508
Target:  5'- aGGCgGCGCGGGGGCGAcG-GGAaagUCa -3'
miRNA:   3'- -CCG-CGCGCUCCUGCUcCuCCUaa-AGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.