miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 183266 1.12 0.003821
Target:  5'- aGGCGCGCGAGGACGAGGAGGAUUUCGg -3'
miRNA:   3'- -CCGCGCGCUCCUGCUCCUCCUAAAGC- -5'
14016 3' -55.8 NC_003521.1 + 16746 0.88 0.121335
Target:  5'- cGGCGCGCgcgcccgccgGAGGACGAGGAGGGUgaCGa -3'
miRNA:   3'- -CCGCGCG----------CUCCUGCUCCUCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 43614 0.82 0.26129
Target:  5'- aGCGCGacgacaaCGAGGACGAGGAGGAgg-CGg -3'
miRNA:   3'- cCGCGC-------GCUCCUGCUCCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 17059 0.82 0.274064
Target:  5'- cGGCGCcgacaGCGAGGACGAcgagugGGAGGAUUUgGg -3'
miRNA:   3'- -CCGCG-----CGCUCCUGCU------CCUCCUAAAgC- -5'
14016 3' -55.8 NC_003521.1 + 18094 0.77 0.482135
Target:  5'- cGGC-CGCGGGGACgGAGGAGGuag-CGg -3'
miRNA:   3'- -CCGcGCGCUCCUG-CUCCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 68197 0.77 0.491263
Target:  5'- gGGCGCGUGAGGAcCGAGGAcguGGAc---- -3'
miRNA:   3'- -CCGCGCGCUCCU-GCUCCU---CCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 113359 0.75 0.576478
Target:  5'- gGGaCGgGcCGGGGGCGAGGAGGAgggUUaCGg -3'
miRNA:   3'- -CC-GCgC-GCUCCUGCUCCUCCUa--AA-GC- -5'
14016 3' -55.8 NC_003521.1 + 69453 0.74 0.635135
Target:  5'- aGGUGCGCGAGG-CGcAGGgcAGGAUcacgUCGa -3'
miRNA:   3'- -CCGCGCGCUCCuGC-UCC--UCCUAa---AGC- -5'
14016 3' -55.8 NC_003521.1 + 117928 0.74 0.635135
Target:  5'- cGGUGCGC-AGGACgGGGGAGGAg---- -3'
miRNA:   3'- -CCGCGCGcUCCUG-CUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 19084 0.74 0.654741
Target:  5'- gGGC-CGUGAGGAgGAGGGGGAc---- -3'
miRNA:   3'- -CCGcGCGCUCCUgCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 98227 0.74 0.654741
Target:  5'- cGGCGUGgGAGG-CGGGGAGGcgggggCGg -3'
miRNA:   3'- -CCGCGCgCUCCuGCUCCUCCuaaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 190580 0.74 0.674281
Target:  5'- cGGCGUGauCGAGGGCGAGGAGuGGccccgCGa -3'
miRNA:   3'- -CCGCGC--GCUCCUGCUCCUC-CUaaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 170524 0.74 0.684007
Target:  5'- cGGCGUGUGAcggGGACGgggggcAGGAGGGUUUa- -3'
miRNA:   3'- -CCGCGCGCU---CCUGC------UCCUCCUAAAgc -5'
14016 3' -55.8 NC_003521.1 + 199464 0.73 0.693695
Target:  5'- uGGCGCGCGuAGGuGCGAcGGuGGAUgacgCGa -3'
miRNA:   3'- -CCGCGCGC-UCC-UGCU-CCuCCUAaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 36774 0.73 0.703334
Target:  5'- cGCGCGUGGccuggcGGGCGuGGAGGAcgcgccUUUCGg -3'
miRNA:   3'- cCGCGCGCU------CCUGCuCCUCCU------AAAGC- -5'
14016 3' -55.8 NC_003521.1 + 49609 0.72 0.759732
Target:  5'- cGGCGC-UGGGGACGcGGAGGAcacggCGa -3'
miRNA:   3'- -CCGCGcGCUCCUGCuCCUCCUaaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 148501 0.72 0.776896
Target:  5'- aGGCGgGCGgaugggauccGGGACGgggguggGGGAGGGUUUUa -3'
miRNA:   3'- -CCGCgCGC----------UCCUGC-------UCCUCCUAAAGc -5'
14016 3' -55.8 NC_003521.1 + 163985 0.72 0.777788
Target:  5'- aGGaCGCGCG-GGAaGAGGAGGAa---- -3'
miRNA:   3'- -CC-GCGCGCuCCUgCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 90873 0.71 0.795364
Target:  5'- cGGC-CGagGGGGACGGGGAGGGggaCGa -3'
miRNA:   3'- -CCGcGCg-CUCCUGCUCCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 95549 0.71 0.795364
Target:  5'- cGGCGCGCGAgcuggccgccgaGGcCGAGGAGGc----- -3'
miRNA:   3'- -CCGCGCGCU------------CCuGCUCCUCCuaaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.