miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 1080 0.66 0.964831
Target:  5'- cGGCGgGCGAGGcCGAagccaGAGGAcuccuaccacgaUUUCa -3'
miRNA:   3'- -CCGCgCGCUCCuGCUc----CUCCU------------AAAGc -5'
14016 3' -55.8 NC_003521.1 + 5410 0.71 0.803953
Target:  5'- gGGCcucGCcCGAGGACGAGGcGGAggaaUCGg -3'
miRNA:   3'- -CCG---CGcGCUCCUGCUCCuCCUaa--AGC- -5'
14016 3' -55.8 NC_003521.1 + 7837 0.66 0.975873
Target:  5'- cGGCGC-CaGAaGACGAGGGGGugg-CGg -3'
miRNA:   3'- -CCGCGcG-CUcCUGCUCCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 11858 0.66 0.970724
Target:  5'- -cCGCGCaccuccucGGACGAGGAGGAc---- -3'
miRNA:   3'- ccGCGCGcu------CCUGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 13990 0.67 0.958152
Target:  5'- cGGCGCgGCGGcGGGCGAGGAc------- -3'
miRNA:   3'- -CCGCG-CGCU-CCUGCUCCUccuaaagc -5'
14016 3' -55.8 NC_003521.1 + 16585 0.68 0.917628
Target:  5'- aGGCGaC-CGGGGAgGAcGGAGGAUggUGg -3'
miRNA:   3'- -CCGC-GcGCUCCUgCU-CCUCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 16746 0.88 0.121335
Target:  5'- cGGCGCGCgcgcccgccgGAGGACGAGGAGGGUgaCGa -3'
miRNA:   3'- -CCGCGCG----------CUCCUGCUCCUCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 16900 0.67 0.950653
Target:  5'- aGGagGUG-GAGGACGAGGAGGcggaCGa -3'
miRNA:   3'- -CCg-CGCgCUCCUGCUCCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 17059 0.82 0.274064
Target:  5'- cGGCGCcgacaGCGAGGACGAcgagugGGAGGAUUUgGg -3'
miRNA:   3'- -CCGCG-----CGCUCCUGCU------CCUCCUAAAgC- -5'
14016 3' -55.8 NC_003521.1 + 18094 0.77 0.482135
Target:  5'- cGGC-CGCGGGGACgGAGGAGGuag-CGg -3'
miRNA:   3'- -CCGcGCGCUCCUG-CUCCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 18739 0.66 0.975873
Target:  5'- cGGCGCuGC-AGGGCGggcuguGGGAGGAc---- -3'
miRNA:   3'- -CCGCG-CGcUCCUGC------UCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 19084 0.74 0.654741
Target:  5'- gGGC-CGUGAGGAgGAGGGGGAc---- -3'
miRNA:   3'- -CCGcGCGCUCCUgCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 25570 0.67 0.950653
Target:  5'- aGGCGgcCGCGGGGAC-AGGuGGGcuugUUCa -3'
miRNA:   3'- -CCGC--GCGCUCCUGcUCCuCCUa---AAGc -5'
14016 3' -55.8 NC_003521.1 + 26053 0.68 0.928158
Target:  5'- cGGCgaGCGgGAGGGgggaGAGGAGGAa---- -3'
miRNA:   3'- -CCG--CGCgCUCCUg---CUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 29373 0.69 0.906224
Target:  5'- uGGCcugccccgacCGCGAGGcCGAGGAGGAc---- -3'
miRNA:   3'- -CCGc---------GCGCUCCuGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 31014 0.7 0.841509
Target:  5'- cGGCGCcgGCGAGGACGcguucguggugguGGGGGGUg--- -3'
miRNA:   3'- -CCGCG--CGCUCCUGCu------------CCUCCUAaagc -5'
14016 3' -55.8 NC_003521.1 + 33693 0.68 0.928158
Target:  5'- aGGCuCGgGAGGGagaaGAGGAGGAa---- -3'
miRNA:   3'- -CCGcGCgCUCCUg---CUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 36254 0.68 0.917628
Target:  5'- cGGCGCGCGAcGugGuGGAuucguGGA--UCGa -3'
miRNA:   3'- -CCGCGCGCUcCugCuCCU-----CCUaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 36406 0.69 0.887508
Target:  5'- cGGCaGCGCG-GGGCGu---GGAUUUCGc -3'
miRNA:   3'- -CCG-CGCGCuCCUGCuccuCCUAAAGC- -5'
14016 3' -55.8 NC_003521.1 + 36774 0.73 0.703334
Target:  5'- cGCGCGUGGccuggcGGGCGuGGAGGAcgcgccUUUCGg -3'
miRNA:   3'- cCGCGCGCU------CCUGCuCCUCCU------AAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.