miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 239092 0.71 0.820694
Target:  5'- cGGuCGCGgGAGGAacgcgaGGGGAGGGgacCGg -3'
miRNA:   3'- -CC-GCGCgCUCCUg-----CUCCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 235589 0.7 0.844609
Target:  5'- cGUGCGgGAGGACGAGaGGcGGAc-UCGg -3'
miRNA:   3'- cCGCGCgCUCCUGCUC-CU-CCUaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 206636 0.66 0.967873
Target:  5'- cGUGuCGCGAcauGGACGugcAGGGGGAUguuaugUCGc -3'
miRNA:   3'- cCGC-GCGCU---CCUGC---UCCUCCUAa-----AGC- -5'
14016 3' -55.8 NC_003521.1 + 206386 0.67 0.958152
Target:  5'- aGGCGUGUcGGGACuuuccaGAcGGGGAUUUCa -3'
miRNA:   3'- -CCGCGCGcUCCUG------CUcCUCCUAAAGc -5'
14016 3' -55.8 NC_003521.1 + 204702 0.71 0.828833
Target:  5'- aGgGCaGCGAGGugaccaccacgGCGGGGAGGGUggCGa -3'
miRNA:   3'- cCgCG-CGCUCC-----------UGCUCCUCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 199464 0.73 0.693695
Target:  5'- uGGCGCGCGuAGGuGCGAcGGuGGAUgacgCGa -3'
miRNA:   3'- -CCGCGCGC-UCC-UGCU-CCuCCUAaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 197279 0.69 0.893958
Target:  5'- cGGCG-GCGGGGAgCG-GGAGGGcggcUCGa -3'
miRNA:   3'- -CCGCgCGCUCCU-GCuCCUCCUaa--AGC- -5'
14016 3' -55.8 NC_003521.1 + 196886 0.67 0.961592
Target:  5'- cGCGgGUGAGGcCGGGGcGGAaggCGg -3'
miRNA:   3'- cCGCgCGCUCCuGCUCCuCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 193306 0.67 0.961592
Target:  5'- cGGCGCG-GGGGugGuGGgcacggugGGGGUggUCGc -3'
miRNA:   3'- -CCGCGCgCUCCugCuCC--------UCCUAa-AGC- -5'
14016 3' -55.8 NC_003521.1 + 191379 0.66 0.964831
Target:  5'- aGCGCGCaGAcGGCGuGGAGGAc---- -3'
miRNA:   3'- cCGCGCG-CUcCUGCuCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 190580 0.74 0.674281
Target:  5'- cGGCGUGauCGAGGGCGAGGAGuGGccccgCGa -3'
miRNA:   3'- -CCGCGC--GCUCCUGCUCCUC-CUaaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 185214 0.68 0.928158
Target:  5'- gGGcCGCGCGGGacugcguguacGACGAGGAGacGGUguggUCGc -3'
miRNA:   3'- -CC-GCGCGCUC-----------CUGCUCCUC--CUAa---AGC- -5'
14016 3' -55.8 NC_003521.1 + 184422 0.66 0.96388
Target:  5'- cGGCGCuGCGAGGAguccugccccaaggUGAcGGucaacaccgAGGAUUUCu -3'
miRNA:   3'- -CCGCG-CGCUCCU--------------GCU-CC---------UCCUAAAGc -5'
14016 3' -55.8 NC_003521.1 + 183266 1.12 0.003821
Target:  5'- aGGCGCGCGAGGACGAGGAGGAUUUCGg -3'
miRNA:   3'- -CCGCGCGCUCCUGCUCCUCCUAAAGC- -5'
14016 3' -55.8 NC_003521.1 + 182844 0.66 0.973388
Target:  5'- cGGCGCugacaacagcaGCGAGGACGAuGAuGAUagCGa -3'
miRNA:   3'- -CCGCG-----------CGCUCCUGCUcCUcCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 181863 0.69 0.887508
Target:  5'- cGGCGCGCuucuucgcgccaGAGGGCcuGGuGGAgUUCGa -3'
miRNA:   3'- -CCGCGCG------------CUCCUGcuCCuCCUaAAGC- -5'
14016 3' -55.8 NC_003521.1 + 181664 0.67 0.961592
Target:  5'- uGGUGCGCGGGGGaGAucGGAGaGAga-CGg -3'
miRNA:   3'- -CCGCGCGCUCCUgCU--CCUC-CUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 178842 0.69 0.887508
Target:  5'- aGGCgGCGCGGGGGCGAcG-GGAaagUCa -3'
miRNA:   3'- -CCG-CGCGCUCCUGCUcCuCCUaa-AGc -5'
14016 3' -55.8 NC_003521.1 + 178786 0.66 0.964831
Target:  5'- cGGCGUccGCG-GGACGGGcGAGGcAUgccCGg -3'
miRNA:   3'- -CCGCG--CGCuCCUGCUC-CUCC-UAaa-GC- -5'
14016 3' -55.8 NC_003521.1 + 178619 0.66 0.972608
Target:  5'- cGGCGUccaacgccuccuggGCGAuagGGGgGAGGAGGGUgacagUCc -3'
miRNA:   3'- -CCGCG--------------CGCU---CCUgCUCCUCCUAa----AGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.