miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 36254 0.68 0.917628
Target:  5'- cGGCGCGCGAcGugGuGGAuucguGGA--UCGa -3'
miRNA:   3'- -CCGCGCGCUcCugCuCCU-----CCUaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 160448 0.7 0.852235
Target:  5'- aGGCGCGacggcacggcaGAGGAUGAugugGGAGGAgaggCGa -3'
miRNA:   3'- -CCGCGCg----------CUCCUGCU----CCUCCUaaa-GC- -5'
14016 3' -55.8 NC_003521.1 + 78280 0.69 0.880173
Target:  5'- aGGCGCGUGAGGAUGuacuucaagucgaAGGAGuuGAUgUUGu -3'
miRNA:   3'- -CCGCGCGCUCCUGC-------------UCCUC--CUAaAGC- -5'
14016 3' -55.8 NC_003521.1 + 104976 0.69 0.88085
Target:  5'- gGGCGcCGCGA-GACGucGGAGGAgucUUCu -3'
miRNA:   3'- -CCGC-GCGCUcCUGCu-CCUCCUa--AAGc -5'
14016 3' -55.8 NC_003521.1 + 71417 0.69 0.886851
Target:  5'- cGGCG-GCcccgaaccugacaGAGGACGAGGcgGGGAUcgCGg -3'
miRNA:   3'- -CCGCgCG-------------CUCCUGCUCC--UCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 178842 0.69 0.887508
Target:  5'- aGGCgGCGCGGGGGCGAcG-GGAaagUCa -3'
miRNA:   3'- -CCG-CGCGCUCCUGCUcCuCCUaa-AGc -5'
14016 3' -55.8 NC_003521.1 + 29373 0.69 0.906224
Target:  5'- uGGCcugccccgacCGCGAGGcCGAGGAGGAc---- -3'
miRNA:   3'- -CCGc---------GCGCUCCuGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 133695 0.68 0.914299
Target:  5'- aGGUGUGCcuguacgagcuggacGAGGACGAGGugggcAGGAgaugcUCGg -3'
miRNA:   3'- -CCGCGCG---------------CUCCUGCUCC-----UCCUaa---AGC- -5'
14016 3' -55.8 NC_003521.1 + 16585 0.68 0.917628
Target:  5'- aGGCGaC-CGGGGAgGAcGGAGGAUggUGg -3'
miRNA:   3'- -CCGC-GcGCUCCUgCU-CCUCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 163918 0.7 0.849966
Target:  5'- gGGUGCgGCGgcagcggcaacgaaAGaGGCGAGGAGGAgucUCGg -3'
miRNA:   3'- -CCGCG-CGC--------------UC-CUGCUCCUCCUaa-AGC- -5'
14016 3' -55.8 NC_003521.1 + 235589 0.7 0.844609
Target:  5'- cGUGCGgGAGGACGAGaGGcGGAc-UCGg -3'
miRNA:   3'- cCGCGCgCUCCUGCUC-CU-CCUaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 31014 0.7 0.841509
Target:  5'- cGGCGCcgGCGAGGACGcguucguggugguGGGGGGUg--- -3'
miRNA:   3'- -CCGCG--CGCUCCUGCu------------CCUCCUAaagc -5'
14016 3' -55.8 NC_003521.1 + 18094 0.77 0.482135
Target:  5'- cGGC-CGCGGGGACgGAGGAGGuag-CGg -3'
miRNA:   3'- -CCGcGCGCUCCUG-CUCCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 113359 0.75 0.576478
Target:  5'- gGGaCGgGcCGGGGGCGAGGAGGAgggUUaCGg -3'
miRNA:   3'- -CC-GCgC-GCUCCUGCUCCUCCUa--AA-GC- -5'
14016 3' -55.8 NC_003521.1 + 69453 0.74 0.635135
Target:  5'- aGGUGCGCGAGG-CGcAGGgcAGGAUcacgUCGa -3'
miRNA:   3'- -CCGCGCGCUCCuGC-UCC--UCCUAa---AGC- -5'
14016 3' -55.8 NC_003521.1 + 117928 0.74 0.635135
Target:  5'- cGGUGCGC-AGGACgGGGGAGGAg---- -3'
miRNA:   3'- -CCGCGCGcUCCUG-CUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 170524 0.74 0.684007
Target:  5'- cGGCGUGUGAcggGGACGgggggcAGGAGGGUUUa- -3'
miRNA:   3'- -CCGCGCGCU---CCUGC------UCCUCCUAAAgc -5'
14016 3' -55.8 NC_003521.1 + 36774 0.73 0.703334
Target:  5'- cGCGCGUGGccuggcGGGCGuGGAGGAcgcgccUUUCGg -3'
miRNA:   3'- cCGCGCGCU------CCUGCuCCUCCU------AAAGC- -5'
14016 3' -55.8 NC_003521.1 + 101724 0.71 0.820694
Target:  5'- uGCGCgGCGGGGGCGAGauGGGGAa---- -3'
miRNA:   3'- cCGCG-CGCUCCUGCUC--CUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 44910 0.71 0.820694
Target:  5'- cGGCGCggcgGCGAGGACGAagacGAGGAc---- -3'
miRNA:   3'- -CCGCG----CGCUCCUGCUc---CUCCUaaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.