miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 183266 1.12 0.003821
Target:  5'- aGGCGCGCGAGGACGAGGAGGAUUUCGg -3'
miRNA:   3'- -CCGCGCGCUCCUGCUCCUCCUAAAGC- -5'
14016 3' -55.8 NC_003521.1 + 155100 0.7 0.844609
Target:  5'- cGGCGCuGCaggagcAGGGCGuGGAGGAcUUCu -3'
miRNA:   3'- -CCGCG-CGc-----UCCUGCuCCUCCUaAAGc -5'
14016 3' -55.8 NC_003521.1 + 142175 0.7 0.87399
Target:  5'- -cUGCGgaagaaGAGGACGAGGAGGAa---- -3'
miRNA:   3'- ccGCGCg-----CUCCUGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 7837 0.66 0.975873
Target:  5'- cGGCGC-CaGAaGACGAGGGGGugg-CGg -3'
miRNA:   3'- -CCGCGcG-CUcCUGCUCCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 19084 0.74 0.654741
Target:  5'- gGGC-CGUGAGGAgGAGGGGGAc---- -3'
miRNA:   3'- -CCGcGCGCUCCUgCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 98227 0.74 0.654741
Target:  5'- cGGCGUGgGAGG-CGGGGAGGcgggggCGg -3'
miRNA:   3'- -CCGCGCgCUCCuGCUCCUCCuaaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 199464 0.73 0.693695
Target:  5'- uGGCGCGCGuAGGuGCGAcGGuGGAUgacgCGa -3'
miRNA:   3'- -CCGCGCGC-UCC-UGCU-CCuCCUAaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 49609 0.72 0.759732
Target:  5'- cGGCGC-UGGGGACGcGGAGGAcacggCGa -3'
miRNA:   3'- -CCGCGcGCUCCUGCuCCUCCUaaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 90873 0.71 0.795364
Target:  5'- cGGC-CGagGGGGACGGGGAGGGggaCGa -3'
miRNA:   3'- -CCGcGCg-CUCCUGCUCCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 204702 0.71 0.828833
Target:  5'- aGgGCaGCGAGGugaccaccacgGCGGGGAGGGUggCGa -3'
miRNA:   3'- cCgCG-CGCUCC-----------UGCUCCUCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 5410 0.71 0.803953
Target:  5'- gGGCcucGCcCGAGGACGAGGcGGAggaaUCGg -3'
miRNA:   3'- -CCG---CGcGCUCCUGCUCCuCCUaa--AGC- -5'
14016 3' -55.8 NC_003521.1 + 163985 0.72 0.777788
Target:  5'- aGGaCGCGCG-GGAaGAGGAGGAa---- -3'
miRNA:   3'- -CC-GCGCGCuCCUgCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 16746 0.88 0.121335
Target:  5'- cGGCGCGCgcgcccgccgGAGGACGAGGAGGGUgaCGa -3'
miRNA:   3'- -CCGCGCG----------CUCCUGCUCCUCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 95827 0.71 0.818222
Target:  5'- cGGCGCGCGAGGccuCGGuGGcaugccgcuggcucAGGAUgUCGc -3'
miRNA:   3'- -CCGCGCGCUCCu--GCU-CC--------------UCCUAaAGC- -5'
14016 3' -55.8 NC_003521.1 + 17059 0.82 0.274064
Target:  5'- cGGCGCcgacaGCGAGGACGAcgagugGGAGGAUUUgGg -3'
miRNA:   3'- -CCGCG-----CGCUCCUGCU------CCUCCUAAAgC- -5'
14016 3' -55.8 NC_003521.1 + 148501 0.72 0.776896
Target:  5'- aGGCGgGCGgaugggauccGGGACGgggguggGGGAGGGUUUUa -3'
miRNA:   3'- -CCGCgCGC----------UCCUGC-------UCCUCCUAAAGc -5'
14016 3' -55.8 NC_003521.1 + 239092 0.71 0.820694
Target:  5'- cGGuCGCGgGAGGAacgcgaGGGGAGGGgacCGg -3'
miRNA:   3'- -CC-GCGCgCUCCUg-----CUCCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 156963 0.7 0.86693
Target:  5'- -cUGgGuCGAGGACgGAGGAGGAggagUCGa -3'
miRNA:   3'- ccGCgC-GCUCCUG-CUCCUCCUaa--AGC- -5'
14016 3' -55.8 NC_003521.1 + 68197 0.77 0.491263
Target:  5'- gGGCGCGUGAGGAcCGAGGAcguGGAc---- -3'
miRNA:   3'- -CCGCGCGCUCCU-GCUCCU---CCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 190580 0.74 0.674281
Target:  5'- cGGCGUGauCGAGGGCGAGGAGuGGccccgCGa -3'
miRNA:   3'- -CCGCGC--GCUCCUGCUCCUC-CUaaa--GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.