miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 38738 0.67 0.946587
Target:  5'- aGCGCGUGcuGcCGAuGGAGGAUuuaUUCGg -3'
miRNA:   3'- cCGCGCGCucCuGCU-CCUCCUA---AAGC- -5'
14016 3' -55.8 NC_003521.1 + 40915 0.68 0.937809
Target:  5'- aGCGagGCGGGGGCGGcccGGGGGAg--CGc -3'
miRNA:   3'- cCGCg-CGCUCCUGCU---CCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 42679 0.68 0.917628
Target:  5'- gGGUGgGaCGAaGACGAGGAGGAc---- -3'
miRNA:   3'- -CCGCgC-GCUcCUGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 43614 0.82 0.26129
Target:  5'- aGCGCGacgacaaCGAGGACGAGGAGGAgg-CGg -3'
miRNA:   3'- cCGCGC-------GCUCCUGCUCCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 44910 0.71 0.820694
Target:  5'- cGGCGCggcgGCGAGGACGAagacGAGGAc---- -3'
miRNA:   3'- -CCGCG----CGCUCCUGCUc---CUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 44938 0.66 0.970724
Target:  5'- -aCGaCGaaGAGGACGGGGAGGAagggCGg -3'
miRNA:   3'- ccGC-GCg-CUCCUGCUCCUCCUaaa-GC- -5'
14016 3' -55.8 NC_003521.1 + 46343 0.67 0.954507
Target:  5'- gGGCGCGuCGucGGACGAGGGcGAa---- -3'
miRNA:   3'- -CCGCGC-GCu-CCUGCUCCUcCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 49609 0.72 0.759732
Target:  5'- cGGCGC-UGGGGACGcGGAGGAcacggCGa -3'
miRNA:   3'- -CCGCGcGCUCCUGCuCCUCCUaaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 50000 0.68 0.917628
Target:  5'- gGGuCGUccaGCGAGGACaAGGAGGAa---- -3'
miRNA:   3'- -CC-GCG---CGCUCCUGcUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 60121 0.67 0.950653
Target:  5'- uGGUGaCGCGAcugcuGaGCGAGGAGGug-UCGa -3'
miRNA:   3'- -CCGC-GCGCU-----CcUGCUCCUCCuaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 60690 0.66 0.970724
Target:  5'- cGGcCGCGCGGGGGaccCGGGGGcGGcgcgggUCGc -3'
miRNA:   3'- -CC-GCGCGCUCCU---GCUCCU-CCuaa---AGC- -5'
14016 3' -55.8 NC_003521.1 + 67062 0.67 0.942306
Target:  5'- -uCGgGCGAGGAgguaGAGGAGGAg--Ca -3'
miRNA:   3'- ccGCgCGCUCCUg---CUCCUCCUaaaGc -5'
14016 3' -55.8 NC_003521.1 + 68197 0.77 0.491263
Target:  5'- gGGCGCGUGAGGAcCGAGGAcguGGAc---- -3'
miRNA:   3'- -CCGCGCGCUCCU-GCUCCU---CCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 69257 0.67 0.956719
Target:  5'- gGGUGCccguuuucuccccUGAGGAUGAGGAGGAa---- -3'
miRNA:   3'- -CCGCGc------------GCUCCUGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 69453 0.74 0.635135
Target:  5'- aGGUGCGCGAGG-CGcAGGgcAGGAUcacgUCGa -3'
miRNA:   3'- -CCGCGCGCUCCuGC-UCC--UCCUAa---AGC- -5'
14016 3' -55.8 NC_003521.1 + 71417 0.69 0.886851
Target:  5'- cGGCG-GCcccgaaccugacaGAGGACGAGGcgGGGAUcgCGg -3'
miRNA:   3'- -CCGCgCG-------------CUCCUGCUCC--UCCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 75882 0.67 0.954507
Target:  5'- cGGCGaCGCGAGccgccgGAGGAGGGgccCGg -3'
miRNA:   3'- -CCGC-GCGCUCcug---CUCCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 76674 0.69 0.900198
Target:  5'- cGCGgacUGCGAGGACGcuGGGGGAcagCGg -3'
miRNA:   3'- cCGC---GCGCUCCUGCu-CCUCCUaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 77736 0.68 0.912035
Target:  5'- uGGCGCcCGAGGACGGGccGGcc-UCGg -3'
miRNA:   3'- -CCGCGcGCUCCUGCUCcuCCuaaAGC- -5'
14016 3' -55.8 NC_003521.1 + 78280 0.69 0.880173
Target:  5'- aGGCGCGUGAGGAUGuacuucaagucgaAGGAGuuGAUgUUGu -3'
miRNA:   3'- -CCGCGCGCUCCUGC-------------UCCUC--CUAaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.