miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 124743 0.66 0.998065
Target:  5'- aGCGAGAaag-GCCCaUGAUCAGCaGCc -3'
miRNA:   3'- aCGUUUUagagCGGGcACUAGUCG-CG- -5'
14016 5' -51.4 NC_003521.1 + 239412 0.66 0.997702
Target:  5'- cGUucacGUCgUCGCUCuUGGUCAGCGUc -3'
miRNA:   3'- aCGuuu-UAG-AGCGGGcACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 91029 0.66 0.997702
Target:  5'- cGCGuGcgC-CGCaCCGUG-UCGGCGUg -3'
miRNA:   3'- aCGUuUuaGaGCG-GGCACuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 79507 0.66 0.997702
Target:  5'- cGCcgGAGcgCUUGCUgGUGggCAGCGg -3'
miRNA:   3'- aCG--UUUuaGAGCGGgCACuaGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 239363 0.66 0.997098
Target:  5'- aGCGGGA---UGCCCGUGugcugccaccggCGGCGCa -3'
miRNA:   3'- aCGUUUUagaGCGGGCACua----------GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 141122 0.67 0.994126
Target:  5'- cGCAGcuUCUgCGCCCGcGAcaccuguuUCGGcCGCg -3'
miRNA:   3'- aCGUUuuAGA-GCGGGCaCU--------AGUC-GCG- -5'
14016 5' -51.4 NC_003521.1 + 110657 0.67 0.994922
Target:  5'- gGCAcgGUCacgGCCCGgucGGcCAGCGCg -3'
miRNA:   3'- aCGUuuUAGag-CGGGCa--CUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 154079 0.67 0.994922
Target:  5'- cGCAGAaagcucaucGUCUgGCCCGUGGggaagaugucgaUCAcCGCc -3'
miRNA:   3'- aCGUUU---------UAGAgCGGGCACU------------AGUcGCG- -5'
14016 5' -51.4 NC_003521.1 + 194598 0.67 0.994922
Target:  5'- gGU--GAUCUCGUCgaGUaguaaaagcuGAUCAGCGCg -3'
miRNA:   3'- aCGuuUUAGAGCGGg-CA----------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 44994 0.67 0.995629
Target:  5'- cGCGAGAUCUCGCUCGaucuggaauccGAUCccacggccGUGCa -3'
miRNA:   3'- aCGUUUUAGAGCGGGCa----------CUAGu-------CGCG- -5'
14016 5' -51.4 NC_003521.1 + 134848 0.67 0.995629
Target:  5'- cGCGGc-UCUgGUCCGUGAUgAGCa- -3'
miRNA:   3'- aCGUUuuAGAgCGGGCACUAgUCGcg -5'
14016 5' -51.4 NC_003521.1 + 44463 0.67 0.993868
Target:  5'- gGUGGAAgugUUCGCCgagaaccuguccaaCGUGAcgCAGCGCa -3'
miRNA:   3'- aCGUUUUa--GAGCGG--------------GCACUa-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 102863 0.67 0.993232
Target:  5'- gGCGuAGGUCUgGgCCGUGcgUAGCGa -3'
miRNA:   3'- aCGU-UUUAGAgCgGGCACuaGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 53124 0.67 0.993232
Target:  5'- cGCGAGAUCagguacacgcagUCGCCCGag---GGCGCg -3'
miRNA:   3'- aCGUUUUAG------------AGCGGGCacuagUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 99616 0.67 0.992233
Target:  5'- cUGCAg-----CGCCCGgcgGcgCAGCGCc -3'
miRNA:   3'- -ACGUuuuagaGCGGGCa--CuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 136002 0.67 0.995629
Target:  5'- gGCcgcGUCaCGCCCGUguucucgggGAUCAGCGa -3'
miRNA:   3'- aCGuuuUAGaGCGGGCA---------CUAGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 173428 0.67 0.993232
Target:  5'- cGCGuuGga-UGCCCGUGGUCAGgGa -3'
miRNA:   3'- aCGUuuUagaGCGGGCACUAGUCgCg -5'
14016 5' -51.4 NC_003521.1 + 127899 0.67 0.995629
Target:  5'- gGCGuAGUagUUGCCCGUGA-CGGgGCc -3'
miRNA:   3'- aCGUuUUAg-AGCGGGCACUaGUCgCG- -5'
14016 5' -51.4 NC_003521.1 + 85382 0.67 0.995629
Target:  5'- cUGCGA---CUCGCCCagcgGGUCGGCcaGCu -3'
miRNA:   3'- -ACGUUuuaGAGCGGGca--CUAGUCG--CG- -5'
14016 5' -51.4 NC_003521.1 + 124726 0.67 0.995629
Target:  5'- aGCGAaaaGAUgUCGCgCG-GA-CAGCGCu -3'
miRNA:   3'- aCGUU---UUAgAGCGgGCaCUaGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.