miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 67074 0.66 0.996253
Target:  5'- gGCuu--UCUgGCCCcaGAUCAcGCGCu -3'
miRNA:   3'- aCGuuuuAGAgCGGGcaCUAGU-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 100232 0.66 0.997926
Target:  5'- aGCGGAgcGUCUCGCCgGccgcgaaauccucGggCGGCGCc -3'
miRNA:   3'- aCGUUU--UAGAGCGGgCa------------CuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 161733 0.66 0.996802
Target:  5'- cGCGAGGUCaUCGCCagCGUGGgggagCuGGUGCc -3'
miRNA:   3'- aCGUUUUAG-AGCGG--GCACUa----G-UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 208045 0.66 0.996253
Target:  5'- cGCGGGucUCUCG-CCGUGAggaAGCGg -3'
miRNA:   3'- aCGUUUu-AGAGCgGGCACUag-UCGCg -5'
14016 5' -51.4 NC_003521.1 + 165890 0.66 0.997702
Target:  5'- gGCAGAuggacucCUUGCCCGUGAU-GGC-Ca -3'
miRNA:   3'- aCGUUUua-----GAGCGGGCACUAgUCGcG- -5'
14016 5' -51.4 NC_003521.1 + 39184 0.66 0.997702
Target:  5'- cGUucacGUCgUCGCUCuUGGUCAGCGUc -3'
miRNA:   3'- aCGuuu-UAG-AGCGGGcACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 97512 0.66 0.996253
Target:  5'- aGCGAGAcCUCGCagagcucgggGUGGUCgaGGCGCu -3'
miRNA:   3'- aCGUUUUaGAGCGgg--------CACUAG--UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 96584 0.66 0.996644
Target:  5'- aGCu-GAUCUgcgCGCCCaUGAugagcaggcaggcgUCGGCGCa -3'
miRNA:   3'- aCGuuUUAGA---GCGGGcACU--------------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 86645 0.66 0.997098
Target:  5'- cGCucGAUCUuggCGgCCGacgacagguugagGAUCAGCGCg -3'
miRNA:   3'- aCGuuUUAGA---GCgGGCa------------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 61901 0.66 0.998065
Target:  5'- aGCc---UCgUCGCCgucauCGUGGUCGGCGUu -3'
miRNA:   3'- aCGuuuuAG-AGCGG-----GCACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 152423 0.66 0.996253
Target:  5'- gUGCAAGAgcgcggccUCUacgUGCCCGacGUCAGCGa -3'
miRNA:   3'- -ACGUUUU--------AGA---GCGGGCacUAGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 53892 0.66 0.997282
Target:  5'- gGCAAcgacAGUCacgCGCUCGUccugCAGCGCu -3'
miRNA:   3'- aCGUU----UUAGa--GCGGGCAcua-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 39135 0.66 0.997098
Target:  5'- aGCGGGA---UGCCCGUGugcugccaccggCGGCGCa -3'
miRNA:   3'- aCGUUUUagaGCGGGCACua----------GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 32233 0.66 0.996253
Target:  5'- cGCAAAcUCagUCG-CCGUGAgaUAGCGCu -3'
miRNA:   3'- aCGUUUuAG--AGCgGGCACUa-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 100522 0.66 0.996253
Target:  5'- aGCGAcGUCgacgggccUGCCCGUGAc--GCGCg -3'
miRNA:   3'- aCGUUuUAGa-------GCGGGCACUaguCGCG- -5'
14016 5' -51.4 NC_003521.1 + 151023 0.66 0.996253
Target:  5'- gGCGcAAGUCUCGgggaaCCgCGUGGUCgcguugaaAGCGCc -3'
miRNA:   3'- aCGU-UUUAGAGC-----GG-GCACUAG--------UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 72356 0.66 0.996253
Target:  5'- aGCAGGucAUCUUccgccucgcccaGCCCGUacUCGGCGUc -3'
miRNA:   3'- aCGUUU--UAGAG------------CGGGCAcuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 122675 0.66 0.997282
Target:  5'- gGUggGGUggcgUCGCCgGUGAUCAuGgGCg -3'
miRNA:   3'- aCGuuUUAg---AGCGGgCACUAGU-CgCG- -5'
14016 5' -51.4 NC_003521.1 + 174784 0.66 0.996253
Target:  5'- gGUAccGUCUUGCCCagcauuucuGUCAGCGCc -3'
miRNA:   3'- aCGUuuUAGAGCGGGcac------UAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 5526 0.66 0.998065
Target:  5'- cGCAucuGUCgUCGCCaguUGG-CGGCGCg -3'
miRNA:   3'- aCGUuu-UAG-AGCGGgc-ACUaGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.