miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 53892 0.66 0.997282
Target:  5'- gGCAAcgacAGUCacgCGCUCGUccugCAGCGCu -3'
miRNA:   3'- aCGUU----UUAGa--GCGGGCAcua-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 54896 0.71 0.942489
Target:  5'- cGCAGuggCUgCGCaCCGUuugcagGAUCAGCGCc -3'
miRNA:   3'- aCGUUuuaGA-GCG-GGCA------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 57490 0.73 0.884585
Target:  5'- gGCAcu-UCUUGCCCaUGA-CGGCGCg -3'
miRNA:   3'- aCGUuuuAGAGCGGGcACUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 58968 0.66 0.998065
Target:  5'- cGCGAAGaagCGCgCCGUcaggcacugguGGUCGGCGUg -3'
miRNA:   3'- aCGUUUUagaGCG-GGCA-----------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 59571 0.66 0.997702
Target:  5'- cGCgGGGGUUUCGUCCGaGA--AGCGCg -3'
miRNA:   3'- aCG-UUUUAGAGCGGGCaCUagUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 61592 0.69 0.98158
Target:  5'- gUGCAGAA-CUCGCUgcaGgggGcgCAGCGCu -3'
miRNA:   3'- -ACGUUUUaGAGCGGg--Ca--CuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 61901 0.66 0.998065
Target:  5'- aGCc---UCgUCGCCgucauCGUGGUCGGCGUu -3'
miRNA:   3'- aCGuuuuAG-AGCGG-----GCACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 62232 0.66 0.997282
Target:  5'- cUGCAGGAgggCGCCCGgcugGAc--GCGCg -3'
miRNA:   3'- -ACGUUUUagaGCGGGCa---CUaguCGCG- -5'
14016 5' -51.4 NC_003521.1 + 65146 0.7 0.971891
Target:  5'- cGCAAgcgGAcCUCGCacgggCCGUGGagUCAGUGCg -3'
miRNA:   3'- aCGUU---UUaGAGCG-----GGCACU--AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 67074 0.66 0.996253
Target:  5'- gGCuu--UCUgGCCCcaGAUCAcGCGCu -3'
miRNA:   3'- aCGuuuuAGAgCGGGcaCUAGU-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 69345 0.77 0.708977
Target:  5'- cGCGGua-CUCGCCCGUcuGA-CAGCGCg -3'
miRNA:   3'- aCGUUuuaGAGCGGGCA--CUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 69610 0.68 0.988518
Target:  5'- gGCuauAAAUCauaGCCCGUcagCGGCGCa -3'
miRNA:   3'- aCGu--UUUAGag-CGGGCAcuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 72200 0.8 0.555815
Target:  5'- cGCAGGAUCU-GCCCGUGAcugcacgaGGCGCa -3'
miRNA:   3'- aCGUUUUAGAgCGGGCACUag------UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 72356 0.66 0.996253
Target:  5'- aGCAGGucAUCUUccgccucgcccaGCCCGUacUCGGCGUc -3'
miRNA:   3'- aCGUUU--UAGAG------------CGGGCAcuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 72539 0.68 0.989884
Target:  5'- gUGCAcGAcUCUaCGgCCGUgcagauccaGAUCAGCGCc -3'
miRNA:   3'- -ACGUuUU-AGA-GCgGGCA---------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 74916 0.7 0.962532
Target:  5'- gGUGGAGUCg-GCCCGg---CAGCGCg -3'
miRNA:   3'- aCGUUUUAGagCGGGCacuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 75829 0.69 0.979435
Target:  5'- uUGCGGccGAUCUCGCCCucgggaaGAUgGGCGa -3'
miRNA:   3'- -ACGUU--UUAGAGCGGGca-----CUAgUCGCg -5'
14016 5' -51.4 NC_003521.1 + 77618 0.69 0.983552
Target:  5'- gGCg------CGCCCGUGA-CGGCGCc -3'
miRNA:   3'- aCGuuuuagaGCGGGCACUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 77797 0.68 0.991119
Target:  5'- cUGCAGAcugccguUCUCGCagaucaugGUGAgCAGCGCg -3'
miRNA:   3'- -ACGUUUu------AGAGCGgg------CACUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 79507 0.66 0.997702
Target:  5'- cGCcgGAGcgCUUGCUgGUGggCAGCGg -3'
miRNA:   3'- aCG--UUUuaGAGCGGgCACuaGUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.