miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 5526 0.66 0.998065
Target:  5'- cGCAucuGUCgUCGCCaguUGG-CGGCGCg -3'
miRNA:   3'- aCGUuu-UAG-AGCGGgc-ACUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 6711 0.73 0.884585
Target:  5'- cUGCuGGGUCUCG-CCGUGGUgCAGgGCc -3'
miRNA:   3'- -ACGuUUUAGAGCgGGCACUA-GUCgCG- -5'
14016 5' -51.4 NC_003521.1 + 13883 0.67 0.994126
Target:  5'- cGCcauGGAUUUCGCCgGgGGgccCGGCGCg -3'
miRNA:   3'- aCGu--UUUAGAGCGGgCaCUa--GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 15313 0.7 0.962532
Target:  5'- cGCGAcgg--CGCCgagcggGUGAUCAGCGCg -3'
miRNA:   3'- aCGUUuuagaGCGGg-----CACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 22385 0.74 0.830585
Target:  5'- aGUggGGUCUUGUUCGUGGUCcuGUGCg -3'
miRNA:   3'- aCGuuUUAGAGCGGGCACUAGu-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 22678 0.72 0.904454
Target:  5'- cUGCuguacuUUUCGCCCGUGAUCuGgGUc -3'
miRNA:   3'- -ACGuuuu--AGAGCGGGCACUAGuCgCG- -5'
14016 5' -51.4 NC_003521.1 + 23944 0.74 0.85496
Target:  5'- cUGCGAcgaccucaucGGUCUCGCCCGcagaggUGGUguGCGUc -3'
miRNA:   3'- -ACGUU----------UUAGAGCGGGC------ACUAguCGCG- -5'
14016 5' -51.4 NC_003521.1 + 24176 0.74 0.85496
Target:  5'- aUGCGGAGUCuUCGCuuucCCGgcGUCGGCGCg -3'
miRNA:   3'- -ACGUUUUAG-AGCG----GGCacUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 24619 0.66 0.996253
Target:  5'- gUGcCAGGAggaccccgCGCCgGUGcUCAGCGCc -3'
miRNA:   3'- -AC-GUUUUaga-----GCGGgCACuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 26732 0.76 0.738771
Target:  5'- cUGCu-GGUCcugaCGCCCGUGAuguggUCGGCGCg -3'
miRNA:   3'- -ACGuuUUAGa---GCGGGCACU-----AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 28104 0.68 0.988518
Target:  5'- aGCAGGcgCUCGCCCaaGAUCgAG-GCc -3'
miRNA:   3'- aCGUUUuaGAGCGGGcaCUAG-UCgCG- -5'
14016 5' -51.4 NC_003521.1 + 28704 0.69 0.974598
Target:  5'- cUGCAGAGUC-CGaCCGUGcgCcagaugguGGCGCa -3'
miRNA:   3'- -ACGUUUUAGaGCgGGCACuaG--------UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 32233 0.66 0.996253
Target:  5'- cGCAAAcUCagUCG-CCGUGAgaUAGCGCu -3'
miRNA:   3'- aCGUUUuAG--AGCgGGCACUa-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 33010 0.68 0.98536
Target:  5'- cGCAGGcUCUCGgCCagcuUGAcCAGCGCc -3'
miRNA:   3'- aCGUUUuAGAGCgGGc---ACUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 39135 0.66 0.997098
Target:  5'- aGCGGGA---UGCCCGUGugcugccaccggCGGCGCa -3'
miRNA:   3'- aCGUUUUagaGCGGGCACua----------GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 39184 0.66 0.997702
Target:  5'- cGUucacGUCgUCGCUCuUGGUCAGCGUc -3'
miRNA:   3'- aCGuuu-UAG-AGCGGGcACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 44463 0.67 0.993868
Target:  5'- gGUGGAAgugUUCGCCgagaaccuguccaaCGUGAcgCAGCGCa -3'
miRNA:   3'- aCGUUUUa--GAGCGG--------------GCACUa-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 44994 0.67 0.995629
Target:  5'- cGCGAGAUCUCGCUCGaucuggaauccGAUCccacggccGUGCa -3'
miRNA:   3'- aCGUUUUAGAGCGGGCa----------CUAGu-------CGCG- -5'
14016 5' -51.4 NC_003521.1 + 49796 0.68 0.988518
Target:  5'- aGCAGAcgCUgcCGCCCGaaUGGcUgGGCGCc -3'
miRNA:   3'- aCGUUUuaGA--GCGGGC--ACU-AgUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 53124 0.67 0.993232
Target:  5'- cGCGAGAUCagguacacgcagUCGCCCGag---GGCGCg -3'
miRNA:   3'- aCGUUUUAG------------AGCGGGCacuagUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.