miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 67074 0.66 0.996253
Target:  5'- gGCuu--UCUgGCCCcaGAUCAcGCGCu -3'
miRNA:   3'- aCGuuuuAGAgCGGGcaCUAGU-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 239412 0.66 0.997702
Target:  5'- cGUucacGUCgUCGCUCuUGGUCAGCGUc -3'
miRNA:   3'- aCGuuu-UAG-AGCGGGcACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 214725 0.66 0.998065
Target:  5'- cGCGucGUCU-GUCUGggcuucGGUCAGCGCc -3'
miRNA:   3'- aCGUuuUAGAgCGGGCa-----CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 110377 0.66 0.996802
Target:  5'- cGCGucgucGAUCgUCGCCCGUagugcGAagaaguccuccgUCAGCGUg -3'
miRNA:   3'- aCGUu----UUAG-AGCGGGCA-----CU------------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 91029 0.66 0.997702
Target:  5'- cGCGuGcgC-CGCaCCGUG-UCGGCGUg -3'
miRNA:   3'- aCGUuUuaGaGCG-GGCACuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 179061 0.66 0.997702
Target:  5'- aGCAGAagcgucagcggGUCgcgUGCCCGUcGUCGGUGa -3'
miRNA:   3'- aCGUUU-----------UAGa--GCGGGCAcUAGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 124743 0.66 0.998065
Target:  5'- aGCGAGAaag-GCCCaUGAUCAGCaGCc -3'
miRNA:   3'- aCGUUUUagagCGGGcACUAGUCG-CG- -5'
14016 5' -51.4 NC_003521.1 + 59571 0.66 0.997702
Target:  5'- cGCgGGGGUUUCGUCCGaGA--AGCGCg -3'
miRNA:   3'- aCG-UUUUAGAGCGGGCaCUagUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 58968 0.66 0.998065
Target:  5'- cGCGAAGaagCGCgCCGUcaggcacugguGGUCGGCGUg -3'
miRNA:   3'- aCGUUUUagaGCG-GGCA-----------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 72356 0.66 0.996253
Target:  5'- aGCAGGucAUCUUccgccucgcccaGCCCGUacUCGGCGUc -3'
miRNA:   3'- aCGUUU--UAGAG------------CGGGCAcuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 5526 0.66 0.998065
Target:  5'- cGCAucuGUCgUCGCCaguUGG-CGGCGCg -3'
miRNA:   3'- aCGUuu-UAG-AGCGGgc-ACUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 79507 0.66 0.997702
Target:  5'- cGCcgGAGcgCUUGCUgGUGggCAGCGg -3'
miRNA:   3'- aCG--UUUuaGAGCGGgCACuaGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 207329 0.66 0.997282
Target:  5'- aGCAGGucuUCggggggcgCGUCCcucgGGUCGGCGCg -3'
miRNA:   3'- aCGUUUu--AGa-------GCGGGca--CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 239363 0.66 0.997098
Target:  5'- aGCGGGA---UGCCCGUGugcugccaccggCGGCGCa -3'
miRNA:   3'- aCGUUUUagaGCGGGCACua----------GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 171038 0.66 0.996853
Target:  5'- gGUAAGAgauguucacccccggCUCGCCCGUccGAUCA-UGCa -3'
miRNA:   3'- aCGUUUUa--------------GAGCGGGCA--CUAGUcGCG- -5'
14016 5' -51.4 NC_003521.1 + 134899 0.66 0.997282
Target:  5'- cGCcgauGAUCUCGUCCaUGAa-GGCGCc -3'
miRNA:   3'- aCGuu--UUAGAGCGGGcACUagUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 88514 0.66 0.997282
Target:  5'- cGCAGcgaCUCGCagCCGUGca-GGCGCa -3'
miRNA:   3'- aCGUUuuaGAGCG--GGCACuagUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 62232 0.66 0.997282
Target:  5'- cUGCAGGAgggCGCCCGgcugGAc--GCGCg -3'
miRNA:   3'- -ACGUUUUagaGCGGGCa---CUaguCGCG- -5'
14016 5' -51.4 NC_003521.1 + 150343 0.66 0.996802
Target:  5'- gGCcccGUCUCGgCCGaGGUCuGCGUg -3'
miRNA:   3'- aCGuuuUAGAGCgGGCaCUAGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 137504 0.66 0.997282
Target:  5'- cGCGAGGUCUgGgaCGUG--CAGCGCc -3'
miRNA:   3'- aCGUUUUAGAgCggGCACuaGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.