miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 104282 0.7 0.958981
Target:  5'- aGCAGcuggauAUCaCGCCCGagGAUCuGCGCu -3'
miRNA:   3'- aCGUUu-----UAGaGCGGGCa-CUAGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 118899 0.72 0.927634
Target:  5'- aGCAugAGGUcCUCGCCCuc-GUCGGCGCc -3'
miRNA:   3'- aCGU--UUUA-GAGCGGGcacUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 215174 0.71 0.937778
Target:  5'- aGCAcGAUCUgcCGCCugauguCGUGGUCAcGCGCc -3'
miRNA:   3'- aCGUuUUAGA--GCGG------GCACUAGU-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 105203 0.71 0.937778
Target:  5'- cGUggGAUC-CGCCCGcGAgCuGCGCg -3'
miRNA:   3'- aCGuuUUAGaGCGGGCaCUaGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 54896 0.71 0.942489
Target:  5'- cGCAGuggCUgCGCaCCGUuugcagGAUCAGCGCc -3'
miRNA:   3'- aCGUUuuaGA-GCG-GGCA------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 88068 0.71 0.942489
Target:  5'- cGCGGuGGUCggcggCGCCCGUGAccacgggccacUCGGCGa -3'
miRNA:   3'- aCGUU-UUAGa----GCGGGCACU-----------AGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 92156 0.71 0.949954
Target:  5'- gGCuccuuccaccggCUCGCCCGggGGUCGGgGCg -3'
miRNA:   3'- aCGuuuua-------GAGCGGGCa-CUAGUCgCG- -5'
14016 5' -51.4 NC_003521.1 + 149966 0.71 0.9512
Target:  5'- -------cCUCGgCCGUGGUCAGCaGCa -3'
miRNA:   3'- acguuuuaGAGCgGGCACUAGUCG-CG- -5'
14016 5' -51.4 NC_003521.1 + 193599 0.71 0.9512
Target:  5'- cGCGGu-UUUCGCCCcuUGGUCGGUGUg -3'
miRNA:   3'- aCGUUuuAGAGCGGGc-ACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 182250 0.72 0.9222
Target:  5'- cGCAu-GUCUCGCuagCCGUGAUUGGCu- -3'
miRNA:   3'- aCGUuuUAGAGCG---GGCACUAGUCGcg -5'
14016 5' -51.4 NC_003521.1 + 115633 0.73 0.898063
Target:  5'- aUGCGGAucaggggCUCGUgCGUG-UCGGCGCc -3'
miRNA:   3'- -ACGUUUua-----GAGCGgGCACuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 109308 0.73 0.894117
Target:  5'- aGCAGGuacuUCUCGCCCGUcacguagcuGGuguguucggacacggUCAGCGCc -3'
miRNA:   3'- aCGUUUu---AGAGCGGGCA---------CU---------------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 72200 0.8 0.555815
Target:  5'- cGCAGGAUCU-GCCCGUGAcugcacgaGGCGCa -3'
miRNA:   3'- aCGUUUUAGAgCGGGCACUag------UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 69345 0.77 0.708977
Target:  5'- cGCGGua-CUCGCCCGUcuGA-CAGCGCg -3'
miRNA:   3'- aCGUUuuaGAGCGGGCA--CUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 153396 0.75 0.812534
Target:  5'- cGCAGGAUCUccucgugcaggugCGCCaccggCGUGGUCAGCaGCa -3'
miRNA:   3'- aCGUUUUAGA-------------GCGG-----GCACUAGUCG-CG- -5'
14016 5' -51.4 NC_003521.1 + 22385 0.74 0.830585
Target:  5'- aGUggGGUCUUGUUCGUGGUCcuGUGCg -3'
miRNA:   3'- aCGuuUUAGAGCGGGCACUAGu-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 23944 0.74 0.85496
Target:  5'- cUGCGAcgaccucaucGGUCUCGCCCGcagaggUGGUguGCGUc -3'
miRNA:   3'- -ACGUU----------UUAGAGCGGGC------ACUAguCGCG- -5'
14016 5' -51.4 NC_003521.1 + 204971 0.74 0.860391
Target:  5'- -uCAAAuUCUCGCCCGcGAugaacucuacauccUCGGCGCg -3'
miRNA:   3'- acGUUUuAGAGCGGGCaCU--------------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 231659 0.74 0.862687
Target:  5'- aUGC-GAGUCUUGCucgCCGUGGUCuGCGUc -3'
miRNA:   3'- -ACGuUUUAGAGCG---GGCACUAGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 57490 0.73 0.884585
Target:  5'- gGCAcu-UCUUGCCCaUGA-CGGCGCg -3'
miRNA:   3'- aCGUuuuAGAGCGGGcACUaGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.