miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 183303 1.12 0.008475
Target:  5'- cUGCAAAAUCUCGCCCGUGAUCAGCGCc -3'
miRNA:   3'- -ACGUUUUAGAGCGGGCACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 74916 0.7 0.962532
Target:  5'- gGUGGAGUCg-GCCCGg---CAGCGCg -3'
miRNA:   3'- aCGUUUUAGagCGGGCacuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 115110 0.7 0.968981
Target:  5'- cUGCAAGuUCUacaGCCCGUGc---GCGCa -3'
miRNA:   3'- -ACGUUUuAGAg--CGGGCACuaguCGCG- -5'
14016 5' -51.4 NC_003521.1 + 5526 0.66 0.998065
Target:  5'- cGCAucuGUCgUCGCCaguUGG-CGGCGCg -3'
miRNA:   3'- aCGUuu-UAG-AGCGGgc-ACUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 182384 0.75 0.795573
Target:  5'- cGCGGAAagUUCGCCCGg---CAGCGCu -3'
miRNA:   3'- aCGUUUUa-GAGCGGGCacuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 223467 0.74 0.84703
Target:  5'- aGCAacGAGUCUCGgCCGuUGGccacCAGCGCg -3'
miRNA:   3'- aCGU--UUUAGAGCgGGC-ACUa---GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 6711 0.73 0.884585
Target:  5'- cUGCuGGGUCUCG-CCGUGGUgCAGgGCc -3'
miRNA:   3'- -ACGuUUUAGAGCgGGCACUA-GUCgCG- -5'
14016 5' -51.4 NC_003521.1 + 22678 0.72 0.904454
Target:  5'- cUGCuguacuUUUCGCCCGUGAUCuGgGUc -3'
miRNA:   3'- -ACGuuuu--AGAGCGGGCACUAGuCgCG- -5'
14016 5' -51.4 NC_003521.1 + 114384 0.72 0.927634
Target:  5'- -aCAAGAUCUCGCCgGUG-UCgcuGGUGCu -3'
miRNA:   3'- acGUUUUAGAGCGGgCACuAG---UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 15313 0.7 0.962532
Target:  5'- cGCGAcgg--CGCCgagcggGUGAUCAGCGCg -3'
miRNA:   3'- aCGUUuuagaGCGGg-----CACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 173031 0.71 0.937778
Target:  5'- aGCAcGcgCUCGCCgGUGggCAGCu- -3'
miRNA:   3'- aCGUuUuaGAGCGGgCACuaGUCGcg -5'
14016 5' -51.4 NC_003521.1 + 164554 0.72 0.916524
Target:  5'- cGCGAGGUCUCGCaggcggCCGUGcgCcucucGCGCc -3'
miRNA:   3'- aCGUUUUAGAGCG------GGCACuaGu----CGCG- -5'
14016 5' -51.4 NC_003521.1 + 151904 0.79 0.586261
Target:  5'- cGCug---CUCGCCCGUGGUCAuCGCu -3'
miRNA:   3'- aCGuuuuaGAGCGGGCACUAGUcGCG- -5'
14016 5' -51.4 NC_003521.1 + 126291 0.71 0.937778
Target:  5'- aGCgGAAAUCgauggUGCCCGUGG-CGGCGg -3'
miRNA:   3'- aCG-UUUUAGa----GCGGGCACUaGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 26732 0.76 0.738771
Target:  5'- cUGCu-GGUCcugaCGCCCGUGAuguggUCGGCGCg -3'
miRNA:   3'- -ACGuuUUAGa---GCGGGCACU-----AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 194711 0.72 0.904454
Target:  5'- cUGCGAAcgCUgCGUCCG-GAggCGGCGCu -3'
miRNA:   3'- -ACGUUUuaGA-GCGGGCaCUa-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 156179 0.71 0.955205
Target:  5'- gUGCGGcAUCUCGCCgGUGGcgcgUCAGgaaGCc -3'
miRNA:   3'- -ACGUUuUAGAGCGGgCACU----AGUCg--CG- -5'
14016 5' -51.4 NC_003521.1 + 97005 0.7 0.965864
Target:  5'- cGCAcGAUCUCGCUgG-GGUU-GCGCg -3'
miRNA:   3'- aCGUuUUAGAGCGGgCaCUAGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 169580 0.76 0.758179
Target:  5'- gGCGGGAUCguggCGUCUGUGcuGUCAGUGCc -3'
miRNA:   3'- aCGUUUUAGa---GCGGGCAC--UAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 24176 0.74 0.85496
Target:  5'- aUGCGGAGUCuUCGCuuucCCGgcGUCGGCGCg -3'
miRNA:   3'- -ACGUUUUAG-AGCG----GGCacUAGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.