miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 183303 1.12 0.008475
Target:  5'- cUGCAAAAUCUCGCCCGUGAUCAGCGCc -3'
miRNA:   3'- -ACGUUUUAGAGCGGGCACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 129272 0.82 0.440216
Target:  5'- aGCA---UCUUGCCCGUGGUCAGCu- -3'
miRNA:   3'- aCGUuuuAGAGCGGGCACUAGUCGcg -5'
14016 5' -51.4 NC_003521.1 + 72200 0.8 0.555815
Target:  5'- cGCAGGAUCU-GCCCGUGAcugcacgaGGCGCa -3'
miRNA:   3'- aCGUUUUAGAgCGGGCACUag------UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 151904 0.79 0.586261
Target:  5'- cGCug---CUCGCCCGUGGUCAuCGCu -3'
miRNA:   3'- aCGuuuuaGAGCGGGCACUAGUcGCG- -5'
14016 5' -51.4 NC_003521.1 + 69345 0.77 0.708977
Target:  5'- cGCGGua-CUCGCCCGUcuGA-CAGCGCg -3'
miRNA:   3'- aCGUUuuaGAGCGGGCA--CUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 26732 0.76 0.738771
Target:  5'- cUGCu-GGUCcugaCGCCCGUGAuguggUCGGCGCg -3'
miRNA:   3'- -ACGuuUUAGa---GCGGGCACU-----AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 169580 0.76 0.758179
Target:  5'- gGCGGGAUCguggCGUCUGUGcuGUCAGUGCc -3'
miRNA:   3'- aCGUUUUAGa---GCGGGCAC--UAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 182384 0.75 0.795573
Target:  5'- cGCGGAAagUUCGCCCGg---CAGCGCu -3'
miRNA:   3'- aCGUUUUa-GAGCGGGCacuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 153396 0.75 0.812534
Target:  5'- cGCAGGAUCUccucgugcaggugCGCCaccggCGUGGUCAGCaGCa -3'
miRNA:   3'- aCGUUUUAGA-------------GCGG-----GCACUAGUCG-CG- -5'
14016 5' -51.4 NC_003521.1 + 22385 0.74 0.830585
Target:  5'- aGUggGGUCUUGUUCGUGGUCcuGUGCg -3'
miRNA:   3'- aCGuuUUAGAGCGGGCACUAGu-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 223467 0.74 0.84703
Target:  5'- aGCAacGAGUCUCGgCCGuUGGccacCAGCGCg -3'
miRNA:   3'- aCGU--UUUAGAGCgGGC-ACUa---GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 24176 0.74 0.85496
Target:  5'- aUGCGGAGUCuUCGCuuucCCGgcGUCGGCGCg -3'
miRNA:   3'- -ACGUUUUAG-AGCG----GGCacUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 23944 0.74 0.85496
Target:  5'- cUGCGAcgaccucaucGGUCUCGCCCGcagaggUGGUguGCGUc -3'
miRNA:   3'- -ACGUU----------UUAGAGCGGGC------ACUAguCGCG- -5'
14016 5' -51.4 NC_003521.1 + 204971 0.74 0.860391
Target:  5'- -uCAAAuUCUCGCCCGcGAugaacucuacauccUCGGCGCg -3'
miRNA:   3'- acGUUUuAGAGCGGGCaCU--------------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 231659 0.74 0.862687
Target:  5'- aUGC-GAGUCUUGCucgCCGUGGUCuGCGUc -3'
miRNA:   3'- -ACGuUUUAGAGCG---GGCACUAGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 6711 0.73 0.884585
Target:  5'- cUGCuGGGUCUCG-CCGUGGUgCAGgGCc -3'
miRNA:   3'- -ACGuUUUAGAGCgGGCACUA-GUCgCG- -5'
14016 5' -51.4 NC_003521.1 + 57490 0.73 0.884585
Target:  5'- gGCAcu-UCUUGCCCaUGA-CGGCGCg -3'
miRNA:   3'- aCGUuuuAGAGCGGGcACUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 109308 0.73 0.894117
Target:  5'- aGCAGGuacuUCUCGCCCGUcacguagcuGGuguguucggacacggUCAGCGCc -3'
miRNA:   3'- aCGUUUu---AGAGCGGGCA---------CU---------------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 115633 0.73 0.898063
Target:  5'- aUGCGGAucaggggCUCGUgCGUG-UCGGCGCc -3'
miRNA:   3'- -ACGUUUua-----GAGCGgGCACuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 22678 0.72 0.904454
Target:  5'- cUGCuguacuUUUCGCCCGUGAUCuGgGUc -3'
miRNA:   3'- -ACGuuuu--AGAGCGGGCACUAGuCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.