miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 194711 0.72 0.904454
Target:  5'- cUGCGAAcgCUgCGUCCG-GAggCGGCGCu -3'
miRNA:   3'- -ACGUUUuaGA-GCGGGCaCUa-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 164554 0.72 0.916524
Target:  5'- cGCGAGGUCUCGCaggcggCCGUGcgCcucucGCGCc -3'
miRNA:   3'- aCGUUUUAGAGCG------GGCACuaGu----CGCG- -5'
14016 5' -51.4 NC_003521.1 + 182250 0.72 0.9222
Target:  5'- cGCAu-GUCUCGCuagCCGUGAUUGGCu- -3'
miRNA:   3'- aCGUuuUAGAGCG---GGCACUAGUCGcg -5'
14016 5' -51.4 NC_003521.1 + 114384 0.72 0.927634
Target:  5'- -aCAAGAUCUCGCCgGUG-UCgcuGGUGCu -3'
miRNA:   3'- acGUUUUAGAGCGGgCACuAG---UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 118899 0.72 0.927634
Target:  5'- aGCAugAGGUcCUCGCCCuc-GUCGGCGCc -3'
miRNA:   3'- aCGU--UUUA-GAGCGGGcacUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 175275 0.71 0.932826
Target:  5'- cUGCucguAGUCggUGCCCGUGAacacggucUCGGCGUc -3'
miRNA:   3'- -ACGuu--UUAGa-GCGGGCACU--------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 105203 0.71 0.937778
Target:  5'- cGUggGAUC-CGCCCGcGAgCuGCGCg -3'
miRNA:   3'- aCGuuUUAGaGCGGGCaCUaGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 215174 0.71 0.937778
Target:  5'- aGCAcGAUCUgcCGCCugauguCGUGGUCAcGCGCc -3'
miRNA:   3'- aCGUuUUAGA--GCGG------GCACUAGU-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 173031 0.71 0.937778
Target:  5'- aGCAcGcgCUCGCCgGUGggCAGCu- -3'
miRNA:   3'- aCGUuUuaGAGCGGgCACuaGUCGcg -5'
14016 5' -51.4 NC_003521.1 + 126291 0.71 0.937778
Target:  5'- aGCgGAAAUCgauggUGCCCGUGG-CGGCGg -3'
miRNA:   3'- aCG-UUUUAGa----GCGGGCACUaGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 54896 0.71 0.942489
Target:  5'- cGCAGuggCUgCGCaCCGUuugcagGAUCAGCGCc -3'
miRNA:   3'- aCGUUuuaGA-GCG-GGCA------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 88068 0.71 0.942489
Target:  5'- cGCGGuGGUCggcggCGCCCGUGAccacgggccacUCGGCGa -3'
miRNA:   3'- aCGUU-UUAGa----GCGGGCACU-----------AGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 92156 0.71 0.949954
Target:  5'- gGCuccuuccaccggCUCGCCCGggGGUCGGgGCg -3'
miRNA:   3'- aCGuuuua-------GAGCGGGCa-CUAGUCgCG- -5'
14016 5' -51.4 NC_003521.1 + 193599 0.71 0.9512
Target:  5'- cGCGGu-UUUCGCCCcuUGGUCGGUGUg -3'
miRNA:   3'- aCGUUuuAGAGCGGGc-ACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 149966 0.71 0.9512
Target:  5'- -------cCUCGgCCGUGGUCAGCaGCa -3'
miRNA:   3'- acguuuuaGAGCgGGCACUAGUCG-CG- -5'
14016 5' -51.4 NC_003521.1 + 156179 0.71 0.955205
Target:  5'- gUGCGGcAUCUCGCCgGUGGcgcgUCAGgaaGCc -3'
miRNA:   3'- -ACGUUuUAGAGCGGgCACU----AGUCg--CG- -5'
14016 5' -51.4 NC_003521.1 + 236164 0.7 0.958981
Target:  5'- aUGCGGcGUUUCGgaaaccCCCGUGAUCcgcuGGCGUg -3'
miRNA:   3'- -ACGUUuUAGAGC------GGGCACUAG----UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 224904 0.7 0.958981
Target:  5'- aGCAGAAUCUCcugcgaggGCUCGUaGAUguacaGGCGCg -3'
miRNA:   3'- aCGUUUUAGAG--------CGGGCA-CUAg----UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 104282 0.7 0.958981
Target:  5'- aGCAGcuggauAUCaCGCCCGagGAUCuGCGCu -3'
miRNA:   3'- aCGUUu-----UAGaGCGGGCa-CUAGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 166745 0.7 0.962532
Target:  5'- gGgAAGAcCUCGCCCGccaGAcagCGGCGCg -3'
miRNA:   3'- aCgUUUUaGAGCGGGCa--CUa--GUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.