Results 21 - 40 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14016 | 5' | -51.4 | NC_003521.1 | + | 207329 | 0.66 | 0.997282 |
Target: 5'- aGCAGGucuUCggggggcgCGUCCcucgGGUCGGCGCg -3' miRNA: 3'- aCGUUUu--AGa-------GCGGGca--CUAGUCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 134899 | 0.66 | 0.997282 |
Target: 5'- cGCcgauGAUCUCGUCCaUGAa-GGCGCc -3' miRNA: 3'- aCGuu--UUAGAGCGGGcACUagUCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 122675 | 0.66 | 0.997282 |
Target: 5'- gGUggGGUggcgUCGCCgGUGAUCAuGgGCg -3' miRNA: 3'- aCGuuUUAg---AGCGGgCACUAGU-CgCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 137504 | 0.66 | 0.997282 |
Target: 5'- cGCGAGGUCUgGgaCGUG--CAGCGCc -3' miRNA: 3'- aCGUUUUAGAgCggGCACuaGUCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 239363 | 0.66 | 0.997098 |
Target: 5'- aGCGGGA---UGCCCGUGugcugccaccggCGGCGCa -3' miRNA: 3'- aCGUUUUagaGCGGGCACua----------GUCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 39135 | 0.66 | 0.997098 |
Target: 5'- aGCGGGA---UGCCCGUGugcugccaccggCGGCGCa -3' miRNA: 3'- aCGUUUUagaGCGGGCACua----------GUCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 86645 | 0.66 | 0.997098 |
Target: 5'- cGCucGAUCUuggCGgCCGacgacagguugagGAUCAGCGCg -3' miRNA: 3'- aCGuuUUAGA---GCgGGCa------------CUAGUCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 171038 | 0.66 | 0.996853 |
Target: 5'- gGUAAGAgauguucacccccggCUCGCCCGUccGAUCA-UGCa -3' miRNA: 3'- aCGUUUUa--------------GAGCGGGCA--CUAGUcGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 150343 | 0.66 | 0.996802 |
Target: 5'- gGCcccGUCUCGgCCGaGGUCuGCGUg -3' miRNA: 3'- aCGuuuUAGAGCgGGCaCUAGuCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 110377 | 0.66 | 0.996802 |
Target: 5'- cGCGucgucGAUCgUCGCCCGUagugcGAagaaguccuccgUCAGCGUg -3' miRNA: 3'- aCGUu----UUAG-AGCGGGCA-----CU------------AGUCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 161733 | 0.66 | 0.996802 |
Target: 5'- cGCGAGGUCaUCGCCagCGUGGgggagCuGGUGCc -3' miRNA: 3'- aCGUUUUAG-AGCGG--GCACUa----G-UCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 96584 | 0.66 | 0.996644 |
Target: 5'- aGCu-GAUCUgcgCGCCCaUGAugagcaggcaggcgUCGGCGCa -3' miRNA: 3'- aCGuuUUAGA---GCGGGcACU--------------AGUCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 208045 | 0.66 | 0.996253 |
Target: 5'- cGCGGGucUCUCG-CCGUGAggaAGCGg -3' miRNA: 3'- aCGUUUu-AGAGCgGGCACUag-UCGCg -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 72356 | 0.66 | 0.996253 |
Target: 5'- aGCAGGucAUCUUccgccucgcccaGCCCGUacUCGGCGUc -3' miRNA: 3'- aCGUUU--UAGAG------------CGGGCAcuAGUCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 197916 | 0.66 | 0.996253 |
Target: 5'- cUGUuGGAUCUCGCUgGgcuccaGAUCgacgGGCGCg -3' miRNA: 3'- -ACGuUUUAGAGCGGgCa-----CUAG----UCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 163397 | 0.66 | 0.996253 |
Target: 5'- gGCAuccUCUCGgCCGUGGccccgucgUCGGCuGCc -3' miRNA: 3'- aCGUuuuAGAGCgGGCACU--------AGUCG-CG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 97512 | 0.66 | 0.996253 |
Target: 5'- aGCGAGAcCUCGCagagcucgggGUGGUCgaGGCGCu -3' miRNA: 3'- aCGUUUUaGAGCGgg--------CACUAG--UCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 152423 | 0.66 | 0.996253 |
Target: 5'- gUGCAAGAgcgcggccUCUacgUGCCCGacGUCAGCGa -3' miRNA: 3'- -ACGUUUU--------AGA---GCGGGCacUAGUCGCg -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 24619 | 0.66 | 0.996253 |
Target: 5'- gUGcCAGGAggaccccgCGCCgGUGcUCAGCGCc -3' miRNA: 3'- -AC-GUUUUaga-----GCGGgCACuAGUCGCG- -5' |
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14016 | 5' | -51.4 | NC_003521.1 | + | 32233 | 0.66 | 0.996253 |
Target: 5'- cGCAAAcUCagUCG-CCGUGAgaUAGCGCu -3' miRNA: 3'- aCGUUUuAG--AGCgGGCACUa-GUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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