miRNA display CGI


Results 41 - 60 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 196415 0.66 0.996253
Target:  5'- gGCAGcggcacagacAGUCgcugUCGCCCG-GGUCGGCcgGCu -3'
miRNA:   3'- aCGUU----------UUAG----AGCGGGCaCUAGUCG--CG- -5'
14016 5' -51.4 NC_003521.1 + 72356 0.66 0.996253
Target:  5'- aGCAGGucAUCUUccgccucgcccaGCCCGUacUCGGCGUc -3'
miRNA:   3'- aCGUUU--UAGAG------------CGGGCAcuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 151023 0.66 0.996253
Target:  5'- gGCGcAAGUCUCGgggaaCCgCGUGGUCgcguugaaAGCGCc -3'
miRNA:   3'- aCGU-UUUAGAGC-----GG-GCACUAG--------UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 100522 0.66 0.996253
Target:  5'- aGCGAcGUCgacgggccUGCCCGUGAc--GCGCg -3'
miRNA:   3'- aCGUUuUAGa-------GCGGGCACUaguCGCG- -5'
14016 5' -51.4 NC_003521.1 + 67074 0.66 0.996253
Target:  5'- gGCuu--UCUgGCCCcaGAUCAcGCGCu -3'
miRNA:   3'- aCGuuuuAGAgCGGGcaCUAGU-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 134848 0.67 0.995629
Target:  5'- cGCGGc-UCUgGUCCGUGAUgAGCa- -3'
miRNA:   3'- aCGUUuuAGAgCGGGCACUAgUCGcg -5'
14016 5' -51.4 NC_003521.1 + 44994 0.67 0.995629
Target:  5'- cGCGAGAUCUCGCUCGaucuggaauccGAUCccacggccGUGCa -3'
miRNA:   3'- aCGUUUUAGAGCGGGCa----------CUAGu-------CGCG- -5'
14016 5' -51.4 NC_003521.1 + 124726 0.67 0.995629
Target:  5'- aGCGAaaaGAUgUCGCgCG-GA-CAGCGCu -3'
miRNA:   3'- aCGUU---UUAgAGCGgGCaCUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 136002 0.67 0.995629
Target:  5'- gGCcgcGUCaCGCCCGUguucucgggGAUCAGCGa -3'
miRNA:   3'- aCGuuuUAGaGCGGGCA---------CUAGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 127899 0.67 0.995629
Target:  5'- gGCGuAGUagUUGCCCGUGA-CGGgGCc -3'
miRNA:   3'- aCGUuUUAg-AGCGGGCACUaGUCgCG- -5'
14016 5' -51.4 NC_003521.1 + 85382 0.67 0.995629
Target:  5'- cUGCGA---CUCGCCCagcgGGUCGGCcaGCu -3'
miRNA:   3'- -ACGUUuuaGAGCGGGca--CUAGUCG--CG- -5'
14016 5' -51.4 NC_003521.1 + 194598 0.67 0.994922
Target:  5'- gGU--GAUCUCGUCgaGUaguaaaagcuGAUCAGCGCg -3'
miRNA:   3'- aCGuuUUAGAGCGGg-CA----------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 154079 0.67 0.994922
Target:  5'- cGCAGAaagcucaucGUCUgGCCCGUGGggaagaugucgaUCAcCGCc -3'
miRNA:   3'- aCGUUU---------UAGAgCGGGCACU------------AGUcGCG- -5'
14016 5' -51.4 NC_003521.1 + 110657 0.67 0.994922
Target:  5'- gGCAcgGUCacgGCCCGgucGGcCAGCGCg -3'
miRNA:   3'- aCGUuuUAGag-CGGGCa--CUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 198070 0.67 0.994922
Target:  5'- aGCAGcuuuuUCUUGCCC----UCGGCGCg -3'
miRNA:   3'- aCGUUuu---AGAGCGGGcacuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 141122 0.67 0.994126
Target:  5'- cGCAGcuUCUgCGCCCGcGAcaccuguuUCGGcCGCg -3'
miRNA:   3'- aCGUUuuAGA-GCGGGCaCU--------AGUC-GCG- -5'
14016 5' -51.4 NC_003521.1 + 13883 0.67 0.994126
Target:  5'- cGCcauGGAUUUCGCCgGgGGgccCGGCGCg -3'
miRNA:   3'- aCGu--UUUAGAGCGGgCaCUa--GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 221826 0.67 0.994126
Target:  5'- gGCGGGcguGUCUCcCUCGUcGcgCGGCGCg -3'
miRNA:   3'- aCGUUU---UAGAGcGGGCA-CuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 44463 0.67 0.993868
Target:  5'- gGUGGAAgugUUCGCCgagaaccuguccaaCGUGAcgCAGCGCa -3'
miRNA:   3'- aCGUUUUa--GAGCGG--------------GCACUa-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 102863 0.67 0.993232
Target:  5'- gGCGuAGGUCUgGgCCGUGcgUAGCGa -3'
miRNA:   3'- aCGU-UUUAGAgCgGGCACuaGUCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.