miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 239412 0.66 0.997702
Target:  5'- cGUucacGUCgUCGCUCuUGGUCAGCGUc -3'
miRNA:   3'- aCGuuu-UAG-AGCGGGcACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 239363 0.66 0.997098
Target:  5'- aGCGGGA---UGCCCGUGugcugccaccggCGGCGCa -3'
miRNA:   3'- aCGUUUUagaGCGGGCACua----------GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 236164 0.7 0.958981
Target:  5'- aUGCGGcGUUUCGgaaaccCCCGUGAUCcgcuGGCGUg -3'
miRNA:   3'- -ACGUUuUAGAGC------GGGCACUAG----UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 234228 0.68 0.988518
Target:  5'- gGUuccGUUUCGCCCGUGAUCAa--- -3'
miRNA:   3'- aCGuuuUAGAGCGGGCACUAGUcgcg -5'
14016 5' -51.4 NC_003521.1 + 231659 0.74 0.862687
Target:  5'- aUGC-GAGUCUUGCucgCCGUGGUCuGCGUc -3'
miRNA:   3'- -ACGuUUUAGAGCG---GGCACUAGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 224904 0.7 0.958981
Target:  5'- aGCAGAAUCUCcugcgaggGCUCGUaGAUguacaGGCGCg -3'
miRNA:   3'- aCGUUUUAGAG--------CGGGCA-CUAg----UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 223467 0.74 0.84703
Target:  5'- aGCAacGAGUCUCGgCCGuUGGccacCAGCGCg -3'
miRNA:   3'- aCGU--UUUAGAGCgGGC-ACUa---GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 221826 0.67 0.994126
Target:  5'- gGCGGGcguGUCUCcCUCGUcGcgCGGCGCg -3'
miRNA:   3'- aCGUUU---UAGAGcGGGCA-CuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 216362 0.67 0.993232
Target:  5'- gUGUGAG-----GCCCGUGGUCcGCGCg -3'
miRNA:   3'- -ACGUUUuagagCGGGCACUAGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 215174 0.71 0.937778
Target:  5'- aGCAcGAUCUgcCGCCugauguCGUGGUCAcGCGCc -3'
miRNA:   3'- aCGUuUUAGA--GCGG------GCACUAGU-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 214725 0.66 0.998065
Target:  5'- cGCGucGUCU-GUCUGggcuucGGUCAGCGCc -3'
miRNA:   3'- aCGUuuUAGAgCGGGCa-----CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 213131 0.68 0.987013
Target:  5'- cUGUGGuuUCUCuCCuCGUGAUCuccGCGCg -3'
miRNA:   3'- -ACGUUuuAGAGcGG-GCACUAGu--CGCG- -5'
14016 5' -51.4 NC_003521.1 + 211933 0.66 0.998065
Target:  5'- cGCAGcGUCUCGUagaccuCCGUGAgcuUgGGCGa -3'
miRNA:   3'- aCGUUuUAGAGCG------GGCACU---AgUCGCg -5'
14016 5' -51.4 NC_003521.1 + 208701 0.66 0.998065
Target:  5'- cGCGcccgCUaccUGCCCGaGAUCAGcCGCg -3'
miRNA:   3'- aCGUuuuaGA---GCGGGCaCUAGUC-GCG- -5'
14016 5' -51.4 NC_003521.1 + 208045 0.66 0.996253
Target:  5'- cGCGGGucUCUCG-CCGUGAggaAGCGg -3'
miRNA:   3'- aCGUUUu-AGAGCgGGCACUag-UCGCg -5'
14016 5' -51.4 NC_003521.1 + 207329 0.66 0.997282
Target:  5'- aGCAGGucuUCggggggcgCGUCCcucgGGUCGGCGCg -3'
miRNA:   3'- aCGUUUu--AGa-------GCGGGca--CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 204971 0.74 0.860391
Target:  5'- -uCAAAuUCUCGCCCGcGAugaacucuacauccUCGGCGCg -3'
miRNA:   3'- acGUUUuAGAGCGGGCaCU--------------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 198070 0.67 0.994922
Target:  5'- aGCAGcuuuuUCUUGCCC----UCGGCGCg -3'
miRNA:   3'- aCGUUuu---AGAGCGGGcacuAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 197916 0.66 0.996253
Target:  5'- cUGUuGGAUCUCGCUgGgcuccaGAUCgacgGGCGCg -3'
miRNA:   3'- -ACGuUUUAGAGCGGgCa-----CUAG----UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 197641 0.69 0.97711
Target:  5'- uUGCAcAGGUCgcgguggCGCUCGUGcggcagCAGCGCc -3'
miRNA:   3'- -ACGU-UUUAGa------GCGGGCACua----GUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.