miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14021 3' -53.8 NC_003521.1 + 196241 0.66 0.989496
Target:  5'- -gUGUCGCGCGcUgaccagaaaguacagGUCGUUGaggGCGUCc -3'
miRNA:   3'- ugACAGCGUGCuA---------------CAGCAACg--CGCAG- -5'
14021 3' -53.8 NC_003521.1 + 153184 0.66 0.987531
Target:  5'- cGCUGUC-CuCGAUGcCGaUGCGCGa- -3'
miRNA:   3'- -UGACAGcGuGCUACaGCaACGCGCag -5'
14021 3' -53.8 NC_003521.1 + 134434 0.66 0.987531
Target:  5'- uGCUGgaugCGguUGGUGUCGg-GCGUGUg -3'
miRNA:   3'- -UGACa---GCguGCUACAGCaaCGCGCAg -5'
14021 3' -53.8 NC_003521.1 + 84761 0.66 0.985962
Target:  5'- --aG-CGCuCGAUGUCGUUGaGCGUg -3'
miRNA:   3'- ugaCaGCGuGCUACAGCAACgCGCAg -5'
14021 3' -53.8 NC_003521.1 + 35811 0.66 0.984247
Target:  5'- --cGUCGCggcACGccGUCGUUaGCGgGUCu -3'
miRNA:   3'- ugaCAGCG---UGCuaCAGCAA-CGCgCAG- -5'
14021 3' -53.8 NC_003521.1 + 172296 0.66 0.984067
Target:  5'- cGCUGcCGCcgucCGGUGUCGgugGCGCcaggccgGUCg -3'
miRNA:   3'- -UGACaGCGu---GCUACAGCaa-CGCG-------CAG- -5'
14021 3' -53.8 NC_003521.1 + 165602 0.66 0.982377
Target:  5'- -----gGCACGAUGUCGUgguugGCgGCGUg -3'
miRNA:   3'- ugacagCGUGCUACAGCAa----CG-CGCAg -5'
14021 3' -53.8 NC_003521.1 + 163637 0.67 0.978143
Target:  5'- cGCU-UCGUGCGGgccUCGgUGCGCGUCu -3'
miRNA:   3'- -UGAcAGCGUGCUac-AGCaACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 127598 0.67 0.978143
Target:  5'- aGCUGU-GCGCGAaGgccaGUaggcUGCGCGUCu -3'
miRNA:   3'- -UGACAgCGUGCUaCag--CA----ACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 103397 0.67 0.978143
Target:  5'- cGCgUGcUCGCGgaaGGUGUUGaucUGCGCGUCg -3'
miRNA:   3'- -UG-AC-AGCGUg--CUACAGCa--ACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 87655 0.67 0.975764
Target:  5'- gGCUGgaggCGCagcccACGAUGUgGUUGCugaGCGUg -3'
miRNA:   3'- -UGACa---GCG-----UGCUACAgCAACG---CGCAg -5'
14021 3' -53.8 NC_003521.1 + 198888 0.67 0.975764
Target:  5'- cACUGUCGCAgccgcgUGAgaaaGUCGUUGCccagcaggGCGUa -3'
miRNA:   3'- -UGACAGCGU------GCUa---CAGCAACG--------CGCAg -5'
14021 3' -53.8 NC_003521.1 + 186924 0.67 0.975764
Target:  5'- cGCUGcaggacgaGCGCGugacUGUCGUUGCGCa-- -3'
miRNA:   3'- -UGACag------CGUGCu---ACAGCAACGCGcag -5'
14021 3' -53.8 NC_003521.1 + 178642 0.67 0.973201
Target:  5'- --cGUCGUugGcgGUCGaUGC-CGUCu -3'
miRNA:   3'- ugaCAGCGugCuaCAGCaACGcGCAG- -5'
14021 3' -53.8 NC_003521.1 + 142991 0.67 0.970447
Target:  5'- uCUGUCGCACcgGcgGUCGcgccgucCGCGUCa -3'
miRNA:   3'- uGACAGCGUG--CuaCAGCaac----GCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 5520 0.67 0.969872
Target:  5'- aGCcGUCGCAUc-UGUCGUcgccaguuggcgGCGCGUCg -3'
miRNA:   3'- -UGaCAGCGUGcuACAGCAa-----------CGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 56714 0.68 0.957406
Target:  5'- cGCUgGUCGCGuCGAcGUCGagcCGCGUCa -3'
miRNA:   3'- -UGA-CAGCGU-GCUaCAGCaacGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 123963 0.68 0.9496
Target:  5'- cACUG-CGCGCGcagGUCGUcGCG-GUCg -3'
miRNA:   3'- -UGACaGCGUGCua-CAGCAaCGCgCAG- -5'
14021 3' -53.8 NC_003521.1 + 121414 0.69 0.940896
Target:  5'- cGCUGgugcuugCGCAUGAagggcUGcggGUUGCGCGUCa -3'
miRNA:   3'- -UGACa------GCGUGCU-----ACag-CAACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 110921 0.69 0.940896
Target:  5'- uGCUGUucCGCACGGUGcCGUUGgUGCa-- -3'
miRNA:   3'- -UGACA--GCGUGCUACaGCAAC-GCGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.