miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14021 3' -53.8 NC_003521.1 + 174219 0.76 0.601424
Target:  5'- --gGUCGCGCGG-GUCGggcagggGCGCGUCg -3'
miRNA:   3'- ugaCAGCGUGCUaCAGCaa-----CGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 165602 0.66 0.982377
Target:  5'- -----gGCACGAUGUCGUgguugGCgGCGUg -3'
miRNA:   3'- ugacagCGUGCUACAGCAa----CG-CGCAg -5'
14021 3' -53.8 NC_003521.1 + 5520 0.67 0.969872
Target:  5'- aGCcGUCGCAUc-UGUCGUcgccaguuggcgGCGCGUCg -3'
miRNA:   3'- -UGaCAGCGUGcuACAGCAa-----------CGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 123963 0.68 0.9496
Target:  5'- cACUG-CGCGCGcagGUCGUcGCG-GUCg -3'
miRNA:   3'- -UGACaGCGUGCua-CAGCAaCGCgCAG- -5'
14021 3' -53.8 NC_003521.1 + 196312 0.69 0.926117
Target:  5'- uGCUGgccaugcagCGCAUGGgccgGUUGUUGCGCugcGUCa -3'
miRNA:   3'- -UGACa--------GCGUGCUa---CAGCAACGCG---CAG- -5'
14021 3' -53.8 NC_003521.1 + 174266 0.7 0.915107
Target:  5'- cGCUGgCGCGCcagGUCGgugaaGCGCGUCu -3'
miRNA:   3'- -UGACaGCGUGcuaCAGCaa---CGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 172296 0.66 0.984067
Target:  5'- cGCUGcCGCcgucCGGUGUCGgugGCGCcaggccgGUCg -3'
miRNA:   3'- -UGACaGCGu---GCUACAGCaa-CGCG-------CAG- -5'
14021 3' -53.8 NC_003521.1 + 163637 0.67 0.978143
Target:  5'- cGCU-UCGUGCGGgccUCGgUGCGCGUCu -3'
miRNA:   3'- -UGAcAGCGUGCUac-AGCaACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 124480 0.69 0.931275
Target:  5'- --cGUCGgGCGGcugGUCGUaGCGCGUg -3'
miRNA:   3'- ugaCAGCgUGCUa--CAGCAaCGCGCAg -5'
14021 3' -53.8 NC_003521.1 + 103407 0.7 0.894934
Target:  5'- cGCUGguggCGUACaugaggucgggguuGAUGUCGacGCGCGUCu -3'
miRNA:   3'- -UGACa---GCGUG--------------CUACAGCaaCGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 183437 0.73 0.75971
Target:  5'- cGCUGUgGCGCGAgaUCGacgcccugGCGCGUCa -3'
miRNA:   3'- -UGACAgCGUGCUacAGCaa------CGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 196241 0.66 0.989496
Target:  5'- -gUGUCGCGCGcUgaccagaaaguacagGUCGUUGaggGCGUCc -3'
miRNA:   3'- ugACAGCGUGCuA---------------CAGCAACg--CGCAG- -5'
14021 3' -53.8 NC_003521.1 + 95815 0.71 0.89034
Target:  5'- --cGUCG-GCGAUGUCGgcGCGCGa- -3'
miRNA:   3'- ugaCAGCgUGCUACAGCaaCGCGCag -5'
14021 3' -53.8 NC_003521.1 + 198888 0.67 0.975764
Target:  5'- cACUGUCGCAgccgcgUGAgaaaGUCGUUGCccagcaggGCGUa -3'
miRNA:   3'- -UGACAGCGU------GCUa---CAGCAACG--------CGCAg -5'
14021 3' -53.8 NC_003521.1 + 180067 1.1 0.006438
Target:  5'- cACUGUCGCACGAUGUCGUUGCGCGUCa -3'
miRNA:   3'- -UGACAGCGUGCUACAGCAACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 103397 0.67 0.978143
Target:  5'- cGCgUGcUCGCGgaaGGUGUUGaucUGCGCGUCg -3'
miRNA:   3'- -UG-AC-AGCGUg--CUACAGCa--ACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 186924 0.67 0.975764
Target:  5'- cGCUGcaggacgaGCGCGugacUGUCGUUGCGCa-- -3'
miRNA:   3'- -UGACag------CGUGCu---ACAGCAACGCGcag -5'
14021 3' -53.8 NC_003521.1 + 87655 0.67 0.975764
Target:  5'- gGCUGgaggCGCagcccACGAUGUgGUUGCugaGCGUg -3'
miRNA:   3'- -UGACa---GCG-----UGCUACAgCAACG---CGCAg -5'
14021 3' -53.8 NC_003521.1 + 178642 0.67 0.973201
Target:  5'- --cGUCGUugGcgGUCGaUGC-CGUCu -3'
miRNA:   3'- ugaCAGCGugCuaCAGCaACGcGCAG- -5'
14021 3' -53.8 NC_003521.1 + 168954 0.69 0.939045
Target:  5'- cGCUGUCGC-CGucgcucccgcugcUGUCGccgacGCGCGUCg -3'
miRNA:   3'- -UGACAGCGuGCu------------ACAGCaa---CGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.