miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 68806 0.69 0.891337
Target:  5'- gCGCCGUC-CGGAUaGA-CUUGCGGGc -3'
miRNA:   3'- gGUGGCAGaGCUUGaCUgGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 74736 0.74 0.63417
Target:  5'- cCUGCCGgcccgCUCccGCuaUGGCCCUGCGGGa -3'
miRNA:   3'- -GGUGGCa----GAGcuUG--ACUGGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 84049 0.7 0.864279
Target:  5'- gCCACCuUCUCGAGCgagaGGCCCUGg--- -3'
miRNA:   3'- -GGUGGcAGAGCUUGa---CUGGGACgccc -5'
14022 5' -56.3 NC_003521.1 + 84515 0.68 0.935509
Target:  5'- gCACCGUCUCcucgaaagaGAGCagcgaGACgCUGgGGGg -3'
miRNA:   3'- gGUGGCAGAG---------CUUGa----CUGgGACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 97339 0.71 0.809915
Target:  5'- gCACCGUCUC--GCUGugCUUGCGc- -3'
miRNA:   3'- gGUGGCAGAGcuUGACugGGACGCcc -5'
14022 5' -56.3 NC_003521.1 + 99880 0.68 0.920546
Target:  5'- gCCACCGUCUCcAugUaGGggUCgUGCGGGu -3'
miRNA:   3'- -GGUGGCAGAGcUugA-CU--GGgACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 102949 0.66 0.971552
Target:  5'- gUCGCgGUCcaggcgcUCGGGCgucggGGCUCUgGCGGGg -3'
miRNA:   3'- -GGUGgCAG-------AGCUUGa----CUGGGA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 103795 0.71 0.801515
Target:  5'- gCCGCCGUgCUCcGGCgagaUGACCgUGCGGa -3'
miRNA:   3'- -GGUGGCA-GAGcUUG----ACUGGgACGCCc -5'
14022 5' -56.3 NC_003521.1 + 108430 0.66 0.959706
Target:  5'- aCAgCGUCUgcCGGA-UGACCUcGCGGGu -3'
miRNA:   3'- gGUgGCAGA--GCUUgACUGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 111547 0.72 0.775517
Target:  5'- aCCGCCGgcgccucuacCUCGAggugcgGCUGAgCCgGCGGGu -3'
miRNA:   3'- -GGUGGCa---------GAGCU------UGACUgGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 113748 0.67 0.944413
Target:  5'- gCCGCC-UCUCGucGgUGGCCCUGCccGGc -3'
miRNA:   3'- -GGUGGcAGAGCu-UgACUGGGACG--CCc -5'
14022 5' -56.3 NC_003521.1 + 115907 0.67 0.948547
Target:  5'- aCACCGUgcUGAACacgGGCCCcgugcUGUGGGa -3'
miRNA:   3'- gGUGGCAgaGCUUGa--CUGGG-----ACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 118322 0.66 0.966143
Target:  5'- cCCGCCG-C-CGcgUUGGCCCUGCa-- -3'
miRNA:   3'- -GGUGGCaGaGCuuGACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 120345 0.66 0.959706
Target:  5'- gCGCC-UCUCGGcGgaGACaCCUGCGGa -3'
miRNA:   3'- gGUGGcAGAGCU-UgaCUG-GGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 120875 0.67 0.944413
Target:  5'- -uGCUGgccUUCGGACUGcCCCUggaGCGGGu -3'
miRNA:   3'- ggUGGCa--GAGCUUGACuGGGA---CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 121021 0.69 0.903653
Target:  5'- aCCACCGUgUCGccccGCUGGCgCCggaagGUGGa -3'
miRNA:   3'- -GGUGGCAgAGCu---UGACUG-GGa----CGCCc -5'
14022 5' -56.3 NC_003521.1 + 121873 0.85 0.182121
Target:  5'- -gACUGUCUCGGgcGCUGGCCCUGaCGGGa -3'
miRNA:   3'- ggUGGCAGAGCU--UGACUGGGAC-GCCC- -5'
14022 5' -56.3 NC_003521.1 + 122944 0.68 0.930737
Target:  5'- gCACCGugaUCUCGAGCca--CgUGCGGGg -3'
miRNA:   3'- gGUGGC---AGAGCUUGacugGgACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 123631 0.71 0.81817
Target:  5'- uCCACCGcCUCGGGCggcGGCagcgaCgGCGGGu -3'
miRNA:   3'- -GGUGGCaGAGCUUGa--CUGg----GaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 130490 0.67 0.953984
Target:  5'- aCACCG---CGAGCgcggccgcgucaugaUGGCCCUGCGGc -3'
miRNA:   3'- gGUGGCagaGCUUG---------------ACUGGGACGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.