miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 2733 0.66 0.959706
Target:  5'- gUCACCGcCUCGcuGGCUGGCUgCUGCuacugcaaaGGGa -3'
miRNA:   3'- -GGUGGCaGAGC--UUGACUGG-GACG---------CCC- -5'
14022 5' -56.3 NC_003521.1 + 3657 0.71 0.79039
Target:  5'- gCCGCCGUCugccUCGGcgGCcggGACCCUcgucggaugcugacGCGGGa -3'
miRNA:   3'- -GGUGGCAG----AGCU--UGa--CUGGGA--------------CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 7011 0.68 0.909497
Target:  5'- aUACCGUaCUUGGGCUGGCgCUGCu-- -3'
miRNA:   3'- gGUGGCA-GAGCUUGACUGgGACGccc -5'
14022 5' -56.3 NC_003521.1 + 11565 0.76 0.557005
Target:  5'- gCGCCGUCgUGcGCcgGACUCUGCGGGg -3'
miRNA:   3'- gGUGGCAGaGCuUGa-CUGGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 11741 0.67 0.95619
Target:  5'- uCgGCCGUCaUCGAcgggcccgACUcGCCCUG-GGGa -3'
miRNA:   3'- -GgUGGCAG-AGCU--------UGAcUGGGACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 16098 0.67 0.948547
Target:  5'- gCCugCGUCggCGAGC--ACCacggGCGGGa -3'
miRNA:   3'- -GGugGCAGa-GCUUGacUGGga--CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 17651 0.67 0.948547
Target:  5'- aCACCGUgaUGAGCgaugcGGCCuccagaCUGCGGGc -3'
miRNA:   3'- gGUGGCAgaGCUUGa----CUGG------GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 17793 0.69 0.891337
Target:  5'- -gGCCGUCggCGuGCUGGCCgUGCGa- -3'
miRNA:   3'- ggUGGCAGa-GCuUGACUGGgACGCcc -5'
14022 5' -56.3 NC_003521.1 + 24782 0.67 0.95619
Target:  5'- cUCAUCGUCUuuaccCGcGACUGGCCCUG-GGc -3'
miRNA:   3'- -GGUGGCAGA-----GC-UUGACUGGGACgCCc -5'
14022 5' -56.3 NC_003521.1 + 30260 0.76 0.519356
Target:  5'- -uGCCGUggCGcAGCUGACCCUgGCGGGc -3'
miRNA:   3'- ggUGGCAgaGC-UUGACUGGGA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 36563 0.74 0.647757
Target:  5'- gCGCCGUCUcCagccuccccaugcgcGAACUGGCCUggcgGCGGGu -3'
miRNA:   3'- gGUGGCAGA-G---------------CUUGACUGGGa---CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 39885 0.67 0.95619
Target:  5'- gCGCCGUacaGggUguUGGCCgaCUGCGGGa -3'
miRNA:   3'- gGUGGCAgagCuuG--ACUGG--GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 44619 0.71 0.81817
Target:  5'- aCACaCG-CUCGAGCUGcagaugauGCgCCUGUGGGu -3'
miRNA:   3'- gGUG-GCaGAGCUUGAC--------UG-GGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 47903 0.68 0.920546
Target:  5'- cUCGCCGUCcUGA--UGGCCCUGaCGGc -3'
miRNA:   3'- -GGUGGCAGaGCUugACUGGGAC-GCCc -5'
14022 5' -56.3 NC_003521.1 + 48831 0.67 0.948547
Target:  5'- aCgGCUG-CUCGAcGCUGACgC-GCGGGa -3'
miRNA:   3'- -GgUGGCaGAGCU-UGACUGgGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 48910 0.66 0.959706
Target:  5'- aCACCGUCUCuucGGCgccGACUaucagcgGCGGGg -3'
miRNA:   3'- gGUGGCAGAGc--UUGa--CUGGga-----CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 57423 0.75 0.614759
Target:  5'- cCCACCGUCUCGcgGACgGGCuCCUGCa-- -3'
miRNA:   3'- -GGUGGCAGAGC--UUGaCUG-GGACGccc -5'
14022 5' -56.3 NC_003521.1 + 58724 0.71 0.809915
Target:  5'- cCCACCGUCUCcaGGCgGcggugcagcaGCCaCUGCGGGc -3'
miRNA:   3'- -GGUGGCAGAGc-UUGaC----------UGG-GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 61973 0.7 0.841996
Target:  5'- aCAUCGUCUCGGug-GACCaagcgcaGCGGGa -3'
miRNA:   3'- gGUGGCAGAGCUugaCUGGga-----CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 62646 0.68 0.909497
Target:  5'- aCACCGUCUCGuagguauCUGcguguucgUCCUGCGGu -3'
miRNA:   3'- gGUGGCAGAGCuu-----GACu-------GGGACGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.