miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 210728 0.68 0.930737
Target:  5'- aUCACCGUCcCGGAaucguaGGCCgUgGCGGGg -3'
miRNA:   3'- -GGUGGCAGaGCUUga----CUGGgA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 44619 0.71 0.81817
Target:  5'- aCACaCG-CUCGAGCUGcagaugauGCgCCUGUGGGu -3'
miRNA:   3'- gGUG-GCaGAGCUUGAC--------UG-GGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 61973 0.7 0.841996
Target:  5'- aCAUCGUCUCGGug-GACCaagcgcaGCGGGa -3'
miRNA:   3'- gGUGGCAGAGCUugaCUGGga-----CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 197135 0.69 0.884871
Target:  5'- -aGCCaUCUgGGACgUGGCCCUGCuGGa -3'
miRNA:   3'- ggUGGcAGAgCUUG-ACUGGGACGcCC- -5'
14022 5' -56.3 NC_003521.1 + 68806 0.69 0.891337
Target:  5'- gCGCCGUC-CGGAUaGA-CUUGCGGGc -3'
miRNA:   3'- gGUGGCAGaGCUUGaCUgGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 210349 0.69 0.893867
Target:  5'- uCCGCCGUCaugacugacgugggaUUGAGCaaGGCCaCUGaCGGGg -3'
miRNA:   3'- -GGUGGCAG---------------AGCUUGa-CUGG-GAC-GCCC- -5'
14022 5' -56.3 NC_003521.1 + 99880 0.68 0.920546
Target:  5'- gCCACCGUCUCcAugUaGGggUCgUGCGGGu -3'
miRNA:   3'- -GGUGGCAGAGcUugA-CU--GGgACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 122944 0.68 0.930737
Target:  5'- gCACCGugaUCUCGAGCca--CgUGCGGGg -3'
miRNA:   3'- gGUGGC---AGAGCUUGacugGgACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 137180 0.68 0.930737
Target:  5'- gCCGCCG-C-CGAGCUGcCCCcGCuGGa -3'
miRNA:   3'- -GGUGGCaGaGCUUGACuGGGaCGcCC- -5'
14022 5' -56.3 NC_003521.1 + 58724 0.71 0.809915
Target:  5'- cCCACCGUCUCcaGGCgGcggugcagcaGCCaCUGCGGGc -3'
miRNA:   3'- -GGUGGCAGAGc-UUGaC----------UGG-GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 103795 0.71 0.801515
Target:  5'- gCCGCCGUgCUCcGGCgagaUGACCgUGCGGa -3'
miRNA:   3'- -GGUGGCA-GAGcUUG----ACUGGgACGCCc -5'
14022 5' -56.3 NC_003521.1 + 3657 0.71 0.79039
Target:  5'- gCCGCCGUCugccUCGGcgGCcggGACCCUcgucggaugcugacGCGGGa -3'
miRNA:   3'- -GGUGGCAG----AGCU--UGa--CUGGGA--------------CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 30260 0.76 0.519356
Target:  5'- -uGCCGUggCGcAGCUGACCCUgGCGGGc -3'
miRNA:   3'- ggUGGCAgaGC-UUGACUGGGA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 209200 0.75 0.576128
Target:  5'- cCCACCGUCggccgCGGuggcccugccaGCUGACCCUGCc-- -3'
miRNA:   3'- -GGUGGCAGa----GCU-----------UGACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 233403 0.75 0.614759
Target:  5'- gCUGCCGUCUCGGcucCUGGCCCcgGUGGc -3'
miRNA:   3'- -GGUGGCAGAGCUu--GACUGGGa-CGCCc -5'
14022 5' -56.3 NC_003521.1 + 57423 0.75 0.614759
Target:  5'- cCCACCGUCUCGcgGACgGGCuCCUGCa-- -3'
miRNA:   3'- -GGUGGCAGAGC--UUGaCUG-GGACGccc -5'
14022 5' -56.3 NC_003521.1 + 204024 0.72 0.736497
Target:  5'- uCCGCCGUCcgCGAGCggcuccgcagcgcgUGGCCCUGCc-- -3'
miRNA:   3'- -GGUGGCAGa-GCUUG--------------ACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 223828 0.72 0.76661
Target:  5'- gCCACCG-CgggCGccuGCUGuCCCUGCGGc -3'
miRNA:   3'- -GGUGGCaGa--GCu--UGACuGGGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 111547 0.72 0.775517
Target:  5'- aCCGCCGgcgccucuacCUCGAggugcgGCUGAgCCgGCGGGu -3'
miRNA:   3'- -GGUGGCa---------GAGCU------UGACUgGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 213024 0.72 0.775517
Target:  5'- gCGCCGgg-CGAGCcGGCCgaGCGGGc -3'
miRNA:   3'- gGUGGCagaGCUUGaCUGGgaCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.