miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 179911 1.13 0.003358
Target:  5'- cCCACCGUCUCGAACUGACCCUGCGGGa -3'
miRNA:   3'- -GGUGGCAGAGCUUGACUGGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 232387 0.85 0.182121
Target:  5'- uCCACCGUCUCGcGCUGGCugcgCCUGCGGc -3'
miRNA:   3'- -GGUGGCAGAGCuUGACUG----GGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 121873 0.85 0.182121
Target:  5'- -gACUGUCUCGGgcGCUGGCCCUGaCGGGa -3'
miRNA:   3'- ggUGGCAGAGCU--UGACUGGGAC-GCCC- -5'
14022 5' -56.3 NC_003521.1 + 30260 0.76 0.519356
Target:  5'- -uGCCGUggCGcAGCUGACCCUgGCGGGc -3'
miRNA:   3'- ggUGGCAgaGC-UUGACUGGGA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 11565 0.76 0.557005
Target:  5'- gCGCCGUCgUGcGCcgGACUCUGCGGGg -3'
miRNA:   3'- gGUGGCAGaGCuUGa-CUGGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 209200 0.75 0.576128
Target:  5'- cCCACCGUCggccgCGGuggcccugccaGCUGACCCUGCc-- -3'
miRNA:   3'- -GGUGGCAGa----GCU-----------UGACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 233403 0.75 0.614759
Target:  5'- gCUGCCGUCUCGGcucCUGGCCCcgGUGGc -3'
miRNA:   3'- -GGUGGCAGAGCUu--GACUGGGa-CGCCc -5'
14022 5' -56.3 NC_003521.1 + 57423 0.75 0.614759
Target:  5'- cCCACCGUCUCGcgGACgGGCuCCUGCa-- -3'
miRNA:   3'- -GGUGGCAGAGC--UUGaCUG-GGACGccc -5'
14022 5' -56.3 NC_003521.1 + 74736 0.74 0.63417
Target:  5'- cCUGCCGgcccgCUCccGCuaUGGCCCUGCGGGa -3'
miRNA:   3'- -GGUGGCa----GAGcuUG--ACUGGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 205936 0.74 0.643876
Target:  5'- gCCugCGUCUCGcugGGCUGGCCCUcGCa-- -3'
miRNA:   3'- -GGugGCAGAGC---UUGACUGGGA-CGccc -5'
14022 5' -56.3 NC_003521.1 + 36563 0.74 0.647757
Target:  5'- gCGCCGUCUcCagccuccccaugcgcGAACUGGCCUggcgGCGGGu -3'
miRNA:   3'- gGUGGCAGA-G---------------CUUGACUGGGa---CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 204024 0.72 0.736497
Target:  5'- uCCGCCGUCcgCGAGCggcuccgcagcgcgUGGCCCUGCc-- -3'
miRNA:   3'- -GGUGGCAGa-GCUUG--------------ACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 223828 0.72 0.76661
Target:  5'- gCCACCG-CgggCGccuGCUGuCCCUGCGGc -3'
miRNA:   3'- -GGUGGCaGa--GCu--UGACuGGGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 213024 0.72 0.775517
Target:  5'- gCGCCGgg-CGAGCcGGCCgaGCGGGc -3'
miRNA:   3'- gGUGGCagaGCUUGaCUGGgaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 111547 0.72 0.775517
Target:  5'- aCCGCCGgcgccucuacCUCGAggugcgGCUGAgCCgGCGGGu -3'
miRNA:   3'- -GGUGGCa---------GAGCU------UGACUgGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 151089 0.71 0.784309
Target:  5'- aCCGCCGacccCUCGggUcgGGCCgCUGgGGGa -3'
miRNA:   3'- -GGUGGCa---GAGCuuGa-CUGG-GACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 3657 0.71 0.79039
Target:  5'- gCCGCCGUCugccUCGGcgGCcggGACCCUcgucggaugcugacGCGGGa -3'
miRNA:   3'- -GGUGGCAG----AGCU--UGa--CUGGGA--------------CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 103795 0.71 0.801515
Target:  5'- gCCGCCGUgCUCcGGCgagaUGACCgUGCGGa -3'
miRNA:   3'- -GGUGGCA-GAGcUUG----ACUGGgACGCCc -5'
14022 5' -56.3 NC_003521.1 + 58724 0.71 0.809915
Target:  5'- cCCACCGUCUCcaGGCgGcggugcagcaGCCaCUGCGGGc -3'
miRNA:   3'- -GGUGGCAGAGc-UUGaC----------UGG-GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 97339 0.71 0.809915
Target:  5'- gCACCGUCUC--GCUGugCUUGCGc- -3'
miRNA:   3'- gGUGGCAGAGcuUGACugGGACGCcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.