miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 179911 1.13 0.003358
Target:  5'- cCCACCGUCUCGAACUGACCCUGCGGGa -3'
miRNA:   3'- -GGUGGCAGAGCUUGACUGGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 206156 0.68 0.915128
Target:  5'- aCUGCC-UCUaCGAGCUGGCcuccgaCCUGgGGGg -3'
miRNA:   3'- -GGUGGcAGA-GCUUGACUG------GGACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 47903 0.68 0.920546
Target:  5'- cUCGCCGUCcUGA--UGGCCCUGaCGGc -3'
miRNA:   3'- -GGUGGCAGaGCUugACUGGGAC-GCCc -5'
14022 5' -56.3 NC_003521.1 + 172537 0.66 0.974136
Target:  5'- uCCACCGUCaggCGGgggaucucgugccGCUGuCCCggggucgGCGGu -3'
miRNA:   3'- -GGUGGCAGa--GCU-------------UGACuGGGa------CGCCc -5'
14022 5' -56.3 NC_003521.1 + 205936 0.74 0.643876
Target:  5'- gCCugCGUCUCGcugGGCUGGCCCUcGCa-- -3'
miRNA:   3'- -GGugGCAGAGC---UUGACUGGGA-CGccc -5'
14022 5' -56.3 NC_003521.1 + 36563 0.74 0.647757
Target:  5'- gCGCCGUCUcCagccuccccaugcgcGAACUGGCCUggcgGCGGGu -3'
miRNA:   3'- gGUGGCAGA-G---------------CUUGACUGGGa---CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 97339 0.71 0.809915
Target:  5'- gCACCGUCUC--GCUGugCUUGCGc- -3'
miRNA:   3'- gGUGGCAGAGcuUGACugGGACGCcc -5'
14022 5' -56.3 NC_003521.1 + 123631 0.71 0.81817
Target:  5'- uCCACCGcCUCGGGCggcGGCagcgaCgGCGGGu -3'
miRNA:   3'- -GGUGGCaGAGCUUGa--CUGg----GaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 17793 0.69 0.891337
Target:  5'- -gGCCGUCggCGuGCUGGCCgUGCGa- -3'
miRNA:   3'- ggUGGCAGa-GCuUGACUGGgACGCcc -5'
14022 5' -56.3 NC_003521.1 + 62646 0.68 0.909497
Target:  5'- aCACCGUCUCGuagguauCUGcguguucgUCCUGCGGu -3'
miRNA:   3'- gGUGGCAGAGCuu-----GACu-------GGGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 121021 0.69 0.903653
Target:  5'- aCCACCGUgUCGccccGCUGGCgCCggaagGUGGa -3'
miRNA:   3'- -GGUGGCAgAGCu---UGACUG-GGa----CGCCc -5'
14022 5' -56.3 NC_003521.1 + 84049 0.7 0.864279
Target:  5'- gCCACCuUCUCGAGCgagaGGCCCUGg--- -3'
miRNA:   3'- -GGUGGcAGAGCUUGa---CUGGGACgccc -5'
14022 5' -56.3 NC_003521.1 + 121873 0.85 0.182121
Target:  5'- -gACUGUCUCGGgcGCUGGCCCUGaCGGGa -3'
miRNA:   3'- ggUGGCAGAGCU--UGACUGGGAC-GCCC- -5'
14022 5' -56.3 NC_003521.1 + 173238 0.69 0.903653
Target:  5'- cCCGCgUGUUggCGAcuCUGGCCC-GCGGGg -3'
miRNA:   3'- -GGUG-GCAGa-GCUu-GACUGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 11565 0.76 0.557005
Target:  5'- gCGCCGUCgUGcGCcgGACUCUGCGGGg -3'
miRNA:   3'- gGUGGCAGaGCuUGa-CUGGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 163448 0.7 0.834217
Target:  5'- gCCACCGUCuUCGA----GCCCgugGUGGGc -3'
miRNA:   3'- -GGUGGCAG-AGCUugacUGGGa--CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 7011 0.68 0.909497
Target:  5'- aUACCGUaCUUGGGCUGGCgCUGCu-- -3'
miRNA:   3'- gGUGGCA-GAGCUUGACUGgGACGccc -5'
14022 5' -56.3 NC_003521.1 + 189100 0.68 0.915128
Target:  5'- gCACCGagUCGGACgacgaggaGACCacgCUGUGGGa -3'
miRNA:   3'- gGUGGCagAGCUUGa-------CUGG---GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 74736 0.74 0.63417
Target:  5'- cCUGCCGgcccgCUCccGCuaUGGCCCUGCGGGa -3'
miRNA:   3'- -GGUGGCa----GAGcuUG--ACUGGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 151089 0.71 0.784309
Target:  5'- aCCGCCGacccCUCGggUcgGGCCgCUGgGGGa -3'
miRNA:   3'- -GGUGGCa---GAGCuuGa-CUGG-GACgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.