miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 234647 0.66 0.971819
Target:  5'- -gAUCGUCUCGuucugcgcCUGGCCCcGCcaGGGg -3'
miRNA:   3'- ggUGGCAGAGCuu------GACUGGGaCG--CCC- -5'
14022 5' -56.3 NC_003521.1 + 233403 0.75 0.614759
Target:  5'- gCUGCCGUCUCGGcucCUGGCCCcgGUGGc -3'
miRNA:   3'- -GGUGGCAGAGCUu--GACUGGGa-CGCCc -5'
14022 5' -56.3 NC_003521.1 + 232387 0.85 0.182121
Target:  5'- uCCACCGUCUCGcGCUGGCugcgCCUGCGGc -3'
miRNA:   3'- -GGUGGCAGAGCuUGACUG----GGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 223828 0.72 0.76661
Target:  5'- gCCACCG-CgggCGccuGCUGuCCCUGCGGc -3'
miRNA:   3'- -GGUGGCaGa--GCu--UGACuGGGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 221825 0.67 0.944413
Target:  5'- aCAUCGUUgugCaacAGCUGGCCgCUGUGGGc -3'
miRNA:   3'- gGUGGCAGa--Gc--UUGACUGG-GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 213024 0.72 0.775517
Target:  5'- gCGCCGgg-CGAGCcGGCCgaGCGGGc -3'
miRNA:   3'- gGUGGCagaGCUUGaCUGGgaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 211066 0.66 0.971819
Target:  5'- uCCugC-UCUCGcuCUGucgccguuGCCCgGCGGGg -3'
miRNA:   3'- -GGugGcAGAGCuuGAC--------UGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 210728 0.68 0.930737
Target:  5'- aUCACCGUCcCGGAaucguaGGCCgUgGCGGGg -3'
miRNA:   3'- -GGUGGCAGaGCUUga----CUGGgA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 210349 0.69 0.893867
Target:  5'- uCCGCCGUCaugacugacgugggaUUGAGCaaGGCCaCUGaCGGGg -3'
miRNA:   3'- -GGUGGCAG---------------AGCUUGa-CUGG-GAC-GCCC- -5'
14022 5' -56.3 NC_003521.1 + 209200 0.75 0.576128
Target:  5'- cCCACCGUCggccgCGGuggcccugccaGCUGACCCUGCc-- -3'
miRNA:   3'- -GGUGGCAGa----GCU-----------UGACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 208454 0.66 0.969074
Target:  5'- aCCGCCGUagauagUGcAGCUGACggUGUGGGa -3'
miRNA:   3'- -GGUGGCAga----GC-UUGACUGggACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 206156 0.68 0.915128
Target:  5'- aCUGCC-UCUaCGAGCUGGCcuccgaCCUGgGGGg -3'
miRNA:   3'- -GGUGGcAGA-GCUUGACUG------GGACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 205936 0.74 0.643876
Target:  5'- gCCugCGUCUCGcugGGCUGGCCCUcGCa-- -3'
miRNA:   3'- -GGugGCAGAGC---UUGACUGGGA-CGccc -5'
14022 5' -56.3 NC_003521.1 + 204024 0.72 0.736497
Target:  5'- uCCGCCGUCcgCGAGCggcuccgcagcgcgUGGCCCUGCc-- -3'
miRNA:   3'- -GGUGGCAGa-GCUUG--------------ACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 201574 0.68 0.935509
Target:  5'- uCCaACCGgCUgGGGCUGaacGCCC-GCGGGc -3'
miRNA:   3'- -GG-UGGCaGAgCUUGAC---UGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 198542 0.66 0.971014
Target:  5'- gUACCGUCUgCGAGggccgcuuCUGGCUCUuucuaccgcuuucgGCGGGc -3'
miRNA:   3'- gGUGGCAGA-GCUU--------GACUGGGA--------------CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 197135 0.69 0.884871
Target:  5'- -aGCCaUCUgGGACgUGGCCCUGCuGGa -3'
miRNA:   3'- ggUGGcAGAgCUUG-ACUGGGACGcCC- -5'
14022 5' -56.3 NC_003521.1 + 193011 0.66 0.966143
Target:  5'- aCC-CCGUaCUgGAACUGACC--GCGGc -3'
miRNA:   3'- -GGuGGCA-GAgCUUGACUGGgaCGCCc -5'
14022 5' -56.3 NC_003521.1 + 189100 0.68 0.915128
Target:  5'- gCACCGagUCGGACgacgaggaGACCacgCUGUGGGa -3'
miRNA:   3'- gGUGGCagAGCUUGa-------CUGG---GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 188641 0.66 0.974384
Target:  5'- uCCugCGUCaacggaaucgCGGGCgGACCC-GCGGu -3'
miRNA:   3'- -GGugGCAGa---------GCUUGaCUGGGaCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.