miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 189100 0.68 0.915128
Target:  5'- gCACCGagUCGGACgacgaggaGACCacgCUGUGGGa -3'
miRNA:   3'- gGUGGCagAGCUUGa-------CUGG---GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 163448 0.7 0.834217
Target:  5'- gCCACCGUCuUCGA----GCCCgugGUGGGc -3'
miRNA:   3'- -GGUGGCAG-AGCUugacUGGGa--CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 198542 0.66 0.971014
Target:  5'- gUACCGUCUgCGAGggccgcuuCUGGCUCUuucuaccgcuuucgGCGGGc -3'
miRNA:   3'- gGUGGCAGA-GCUU--------GACUGGGA--------------CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 16098 0.67 0.948547
Target:  5'- gCCugCGUCggCGAGC--ACCacggGCGGGa -3'
miRNA:   3'- -GGugGCAGa-GCUUGacUGGga--CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 47903 0.68 0.920546
Target:  5'- cUCGCCGUCcUGA--UGGCCCUGaCGGc -3'
miRNA:   3'- -GGUGGCAGaGCUugACUGGGAC-GCCc -5'
14022 5' -56.3 NC_003521.1 + 123631 0.71 0.81817
Target:  5'- uCCACCGcCUCGGGCggcGGCagcgaCgGCGGGu -3'
miRNA:   3'- -GGUGGCaGAGCUUGa--CUGg----GaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 48831 0.67 0.948547
Target:  5'- aCgGCUG-CUCGAcGCUGACgC-GCGGGa -3'
miRNA:   3'- -GgUGGCaGAGCU-UGACUGgGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 97339 0.71 0.809915
Target:  5'- gCACCGUCUC--GCUGugCUUGCGc- -3'
miRNA:   3'- gGUGGCAGAGcuUGACugGGACGCcc -5'
14022 5' -56.3 NC_003521.1 + 151089 0.71 0.784309
Target:  5'- aCCGCCGacccCUCGggUcgGGCCgCUGgGGGa -3'
miRNA:   3'- -GGUGGCa---GAGCuuGa-CUGG-GACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 62646 0.68 0.909497
Target:  5'- aCACCGUCUCGuagguauCUGcguguucgUCCUGCGGu -3'
miRNA:   3'- gGUGGCAGAGCuu-----GACu-------GGGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 171348 0.68 0.920546
Target:  5'- aCCACCGUCugaccuUCGAcgUGAUCCUGCc-- -3'
miRNA:   3'- -GGUGGCAG------AGCUugACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 172537 0.66 0.974136
Target:  5'- uCCACCGUCaggCGGgggaucucgugccGCUGuCCCggggucgGCGGu -3'
miRNA:   3'- -GGUGGCAGa--GCU-------------UGACuGGGa------CGCCc -5'
14022 5' -56.3 NC_003521.1 + 149043 0.68 0.937358
Target:  5'- aCCGCCGcC-CGggUguggggggaugcggGACCC-GCGGGg -3'
miRNA:   3'- -GGUGGCaGaGCuuGa-------------CUGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 115907 0.67 0.948547
Target:  5'- aCACCGUgcUGAACacgGGCCCcgugcUGUGGGa -3'
miRNA:   3'- gGUGGCAgaGCUUGa--CUGGG-----ACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 108430 0.66 0.959706
Target:  5'- aCAgCGUCUgcCGGA-UGACCUcGCGGGu -3'
miRNA:   3'- gGUgGCAGA--GCUUgACUGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 102949 0.66 0.971552
Target:  5'- gUCGCgGUCcaggcgcUCGGGCgucggGGCUCUgGCGGGg -3'
miRNA:   3'- -GGUGgCAG-------AGCUUGa----CUGGGA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 206156 0.68 0.915128
Target:  5'- aCUGCC-UCUaCGAGCUGGCcuccgaCCUGgGGGg -3'
miRNA:   3'- -GGUGGcAGA-GCUUGACUG------GGACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 84049 0.7 0.864279
Target:  5'- gCCACCuUCUCGAGCgagaGGCCCUGg--- -3'
miRNA:   3'- -GGUGGcAGAGCUUGa---CUGGGACgccc -5'
14022 5' -56.3 NC_003521.1 + 121021 0.69 0.903653
Target:  5'- aCCACCGUgUCGccccGCUGGCgCCggaagGUGGa -3'
miRNA:   3'- -GGUGGCAgAGCu---UGACUG-GGa----CGCCc -5'
14022 5' -56.3 NC_003521.1 + 118322 0.66 0.966143
Target:  5'- cCCGCCG-C-CGcgUUGGCCCUGCa-- -3'
miRNA:   3'- -GGUGGCaGaGCuuGACUGGGACGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.