miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14023 3' -53.9 NC_003521.1 + 129731 0.66 0.982098
Target:  5'- -cCGUCgacgcgagCGCGUCCGCGCCGu- -3'
miRNA:   3'- uuGCAGaaaag---GCGUAGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 137596 0.68 0.961064
Target:  5'- ---uUCUUgggCCGCcgCCugGCCGGc -3'
miRNA:   3'- uugcAGAAaa-GGCGuaGGugCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 143085 0.72 0.829983
Target:  5'- uACGUCggaUUCGCAgCCGcCGCCGGAg -3'
miRNA:   3'- uUGCAGaaaAGGCGUaGGU-GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 148823 0.67 0.97331
Target:  5'- cGCGcCUcg-CCGCucccgcuccGUUCGCGCCGGAu -3'
miRNA:   3'- uUGCaGAaaaGGCG---------UAGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 149269 0.68 0.960011
Target:  5'- cAUGUCg-UUCCGCGUCgGCGCCcacaaguacgugcuGGAg -3'
miRNA:   3'- uUGCAGaaAAGGCGUAGgUGCGG--------------CCU- -5'
14023 3' -53.9 NC_003521.1 + 155475 0.66 0.98046
Target:  5'- cGAgGUCUggUUCCGCcagaaCCugGCgCGGAu -3'
miRNA:   3'- -UUgCAGAa-AAGGCGua---GGugCG-GCCU- -5'
14023 3' -53.9 NC_003521.1 + 155603 0.66 0.986073
Target:  5'- cAUGUCUcugUCCgGCG-CgGCGCCGGGu -3'
miRNA:   3'- uUGCAGAaa-AGG-CGUaGgUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 156068 0.73 0.777361
Target:  5'- cAACGUCg---CCGCcgCCGCGCCcGAg -3'
miRNA:   3'- -UUGCAGaaaaGGCGuaGGUGCGGcCU- -5'
14023 3' -53.9 NC_003521.1 + 164498 0.7 0.892749
Target:  5'- -cCGUCgccUCCGCAgcugucgccgccaccUCCGCuGCCGGAc -3'
miRNA:   3'- uuGCAGaaaAGGCGU---------------AGGUG-CGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 167169 0.66 0.986073
Target:  5'- gGGCGUCUUggagGCggCCGCGgCGGAg -3'
miRNA:   3'- -UUGCAGAAaaggCGuaGGUGCgGCCU- -5'
14023 3' -53.9 NC_003521.1 + 168293 0.66 0.98436
Target:  5'- -cCGUCgccgCCGCcUCCGCaGCuCGGAg -3'
miRNA:   3'- uuGCAGaaaaGGCGuAGGUG-CG-GCCU- -5'
14023 3' -53.9 NC_003521.1 + 171432 0.68 0.949645
Target:  5'- cGCGUCUg--CUGCGUCuCACGUggcaCGGAc -3'
miRNA:   3'- uUGCAGAaaaGGCGUAG-GUGCG----GCCU- -5'
14023 3' -53.9 NC_003521.1 + 176724 0.69 0.936191
Target:  5'- uGACGuUCUggaagcCCGCcUCCAgGCCGGGc -3'
miRNA:   3'- -UUGC-AGAaaa---GGCGuAGGUgCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 179029 1.07 0.00946
Target:  5'- cAACGUCUUUUCCGCAUCCACGCCGGAg -3'
miRNA:   3'- -UUGCAGAAAAGGCGUAGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 180859 0.68 0.953673
Target:  5'- uGACGUCgcggaUuuGU-UCCGCGCCGGGn -3'
miRNA:   3'- -UUGCAGaaa--AggCGuAGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 180887 0.71 0.838183
Target:  5'- -cUGUUga-UCgGCGUCCACGUCGGAg -3'
miRNA:   3'- uuGCAGaaaAGgCGUAGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 181181 0.66 0.986073
Target:  5'- cAGCGUCUg--CCGCA-CCaACGCCu-- -3'
miRNA:   3'- -UUGCAGAaaaGGCGUaGG-UGCGGccu -5'
14023 3' -53.9 NC_003521.1 + 185647 0.68 0.953673
Target:  5'- --gGUCgugUUUCaGCGUCCGCGCCcGAg -3'
miRNA:   3'- uugCAGa--AAAGgCGUAGGUGCGGcCU- -5'
14023 3' -53.9 NC_003521.1 + 185895 0.69 0.940906
Target:  5'- -cCGUCacUUUUCUGC--CCACGCCGGc -3'
miRNA:   3'- uuGCAG--AAAAGGCGuaGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 186307 0.67 0.970552
Target:  5'- cAGCGgCg---CCGUgcagauccugGUCCACGCCGGGc -3'
miRNA:   3'- -UUGCaGaaaaGGCG----------UAGGUGCGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.