miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14023 3' -53.9 NC_003521.1 + 85212 0.69 0.926061
Target:  5'- uGCGUCac--CCgGCG-CCGCGCCGGAc -3'
miRNA:   3'- uUGCAGaaaaGG-CGUaGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 86039 0.75 0.640109
Target:  5'- uGACGUUgaggUUCCGC-UCCACGCCGu- -3'
miRNA:   3'- -UUGCAGaa--AAGGCGuAGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 87238 0.69 0.926061
Target:  5'- uGACGUUga--CCGUGUCCuCGCCGGu -3'
miRNA:   3'- -UUGCAGaaaaGGCGUAGGuGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 88449 0.74 0.690464
Target:  5'- aGACGUCg--UCCGCcUCgGCGUCGGGc -3'
miRNA:   3'- -UUGCAGaaaAGGCGuAGgUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 89287 0.69 0.914996
Target:  5'- gAugGUacaacCCGCGUCCGCGCCGc- -3'
miRNA:   3'- -UugCAgaaaaGGCGUAGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 101562 0.66 0.987336
Target:  5'- cGGCGUCgucguccccCCGC-UCCGCGCgaGGAg -3'
miRNA:   3'- -UUGCAGaaaa-----GGCGuAGGUGCGg-CCU- -5'
14023 3' -53.9 NC_003521.1 + 102499 0.67 0.975876
Target:  5'- -cCGUCgcgcagCCGCAggUCCAUGUCGGc -3'
miRNA:   3'- uuGCAGaaaa--GGCGU--AGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 103445 0.7 0.903002
Target:  5'- cGCGUCUgcaccagUUCGCGUCCGCggauGCgGGAg -3'
miRNA:   3'- uUGCAGAaa-----AGGCGUAGGUG----CGgCCU- -5'
14023 3' -53.9 NC_003521.1 + 103847 0.66 0.987638
Target:  5'- cGCGUCUcggCCuCGUCCAgGCUGGc -3'
miRNA:   3'- uUGCAGAaaaGGcGUAGGUgCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 111855 0.67 0.97331
Target:  5'- -uCGUCuUUUUCCaGCG-CCACGCCGc- -3'
miRNA:   3'- uuGCAG-AAAAGG-CGUaGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 113284 0.69 0.926061
Target:  5'- cAGCGUCU---UCGC-UCCGCGCuCGGGc -3'
miRNA:   3'- -UUGCAGAaaaGGCGuAGGUGCG-GCCU- -5'
14023 3' -53.9 NC_003521.1 + 115043 0.68 0.961064
Target:  5'- uGCG-CUUcgaUUuuGgGUCCACGUCGGAg -3'
miRNA:   3'- uUGCaGAA---AAggCgUAGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 118211 0.67 0.967595
Target:  5'- gAGCG-CgcggCCGCcgCCGuCGCCGGGg -3'
miRNA:   3'- -UUGCaGaaaaGGCGuaGGU-GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 120163 0.66 0.986073
Target:  5'- cGAUGUCUa--CCGCAucuUCCACGauCUGGAg -3'
miRNA:   3'- -UUGCAGAaaaGGCGU---AGGUGC--GGCCU- -5'
14023 3' -53.9 NC_003521.1 + 123239 0.66 0.987638
Target:  5'- gGugGUCguagcgCCGCGcCCaguagACGCCGGGa -3'
miRNA:   3'- -UugCAGaaaa--GGCGUaGG-----UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 123473 0.75 0.680454
Target:  5'- gGGCGUCagcUCCGUGUCCGuCGCCGGc -3'
miRNA:   3'- -UUGCAGaaaAGGCGUAGGU-GCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 126873 0.67 0.975876
Target:  5'- -cUGUCUgccuccUCCGUGUCgACGCCGaGAc -3'
miRNA:   3'- uuGCAGAaa----AGGCGUAGgUGCGGC-CU- -5'
14023 3' -53.9 NC_003521.1 + 128201 0.69 0.920645
Target:  5'- cAGCGUCUUgagCGCGUCCACGaaguccaucuuCUGGAu -3'
miRNA:   3'- -UUGCAGAAaagGCGUAGGUGC-----------GGCCU- -5'
14023 3' -53.9 NC_003521.1 + 129454 0.69 0.920645
Target:  5'- -cCGUCg---CCGCuaGUCCcgGCGCCGGGa -3'
miRNA:   3'- uuGCAGaaaaGGCG--UAGG--UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 129572 0.69 0.926061
Target:  5'- cGACGauggCUgcUCCGCcgcgCCGCGCCGGc -3'
miRNA:   3'- -UUGCa---GAaaAGGCGua--GGUGCGGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.